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Increase memory and use sort in bedtool_genomecov process when dealing with merged replicates #369

Merged
merged 6 commits into from
Jul 3, 2024
Merged

Increase memory and use sort in bedtool_genomecov process when dealing with merged replicates #369

merged 6 commits into from
Jul 3, 2024

Commits on Jul 3, 2024

  1. Use bash sort instead of bedtools sort (more memory efficient)

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2024
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  2. Increase memory for BEDTOOLS_GENOMECOV for merge duplicates

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2024
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  3. Merge remote-tracking branch 'upstream/dev' into fixes

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2024
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  4. Update changelog

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2024
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  5. Move memory requirements to base.config as requested in review

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2024
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  6. Add --skip_merged_replicate_bigwig parameter

    @JoseEspinosa
    JoseEspinosa committed Jul 3, 2024
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