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Merge pull request #86 from Daniel-VM/dev
Merging template updates 2.9 and workflow update
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{ | ||
"name": "nfcore", | ||
"image": "nfcore/gitpod:latest", | ||
"remoteUser": "gitpod", | ||
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// Configure tool-specific properties. | ||
"customizations": { | ||
// Configure properties specific to VS Code. | ||
"vscode": { | ||
// Set *default* container specific settings.json values on container create. | ||
"settings": { | ||
"python.defaultInterpreterPath": "/opt/conda/bin/python", | ||
"python.linting.enabled": true, | ||
"python.linting.pylintEnabled": true, | ||
"python.formatting.autopep8Path": "/opt/conda/bin/autopep8", | ||
"python.formatting.yapfPath": "/opt/conda/bin/yapf", | ||
"python.linting.flake8Path": "/opt/conda/bin/flake8", | ||
"python.linting.pycodestylePath": "/opt/conda/bin/pycodestyle", | ||
"python.linting.pydocstylePath": "/opt/conda/bin/pydocstyle", | ||
"python.linting.pylintPath": "/opt/conda/bin/pylint" | ||
}, | ||
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// Add the IDs of extensions you want installed when the container is created. | ||
"extensions": ["ms-python.python", "ms-python.vscode-pylance", "nf-core.nf-core-extensionpack"] | ||
} | ||
} | ||
} |
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*.config linguist-language=nextflow | ||
*.nf.test linguist-language=nextflow | ||
modules/nf-core/** linguist-generated | ||
subworkflows/nf-core/** linguist-generated |
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name: Bug report | ||
description: Report something that is broken or incorrect | ||
labels: bug | ||
body: | ||
- type: markdown | ||
attributes: | ||
value: | | ||
Before you post this issue, please check the documentation: | ||
- [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) | ||
- [nf-core/bacass pipeline documentation](https://nf-co.re/bacass/usage) | ||
- type: textarea | ||
id: description | ||
attributes: | ||
label: Description of the bug | ||
description: A clear and concise description of what the bug is. | ||
validations: | ||
required: true | ||
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- type: textarea | ||
id: command_used | ||
attributes: | ||
label: Command used and terminal output | ||
description: Steps to reproduce the behaviour. Please paste the command you used to launch the pipeline and the output from your terminal. | ||
render: console | ||
placeholder: | | ||
$ nextflow run ... | ||
Some output where something broke | ||
- type: textarea | ||
id: files | ||
attributes: | ||
label: Relevant files | ||
description: | | ||
Please drag and drop the relevant files here. Create a `.zip` archive if the extension is not allowed. | ||
Your verbose log file `.nextflow.log` is often useful _(this is a hidden file in the directory where you launched the pipeline)_ as well as custom Nextflow configuration files. | ||
- type: textarea | ||
id: system | ||
attributes: | ||
label: System information | ||
description: | | ||
* Nextflow version _(eg. 23.04.0)_ | ||
* Hardware _(eg. HPC, Desktop, Cloud)_ | ||
* Executor _(eg. slurm, local, awsbatch)_ | ||
* Container engine: _(e.g. Docker, Singularity, Conda, Podman, Shifter, Charliecloud, or Apptainer)_ | ||
* OS _(eg. CentOS Linux, macOS, Linux Mint)_ | ||
* Version of nf-core/bacass _(eg. 1.1, 1.5, 1.8.2)_ |
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blank_issues_enabled: false | ||
contact_links: | ||
- name: Join nf-core | ||
url: https://nf-co.re/join | ||
|
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name: Feature request | ||
description: Suggest an idea for the nf-core/bacass pipeline | ||
labels: enhancement | ||
body: | ||
- type: textarea | ||
id: description | ||
attributes: | ||
label: Description of feature | ||
description: Please describe your suggestion for a new feature. It might help to describe a problem or use case, plus any alternatives that you have considered. | ||
validations: | ||
required: true |
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