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Fix save_unaligned parameter description in schema #395

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merged 4 commits into from
Jul 3, 2024
Merged

Fix save_unaligned parameter description in schema #395

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c0c6347
Fix changelog
JoseEspinosa Jul 3, 2024
a628cc4
Fix save_unaligned parameter description in schema
JoseEspinosa Jul 3, 2024
f6b9c27
Remove code leak
JoseEspinosa Jul 3, 2024
ac7feee
Update nextflow_schema.json
JoseEspinosa Jul 3, 2024
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3 changes: 2 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -23,7 +23,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Updated pipeline template to [nf-core/tools 2.10](https://github.com/nf-core/tools/releases/tag/2.10).
- [[#367](https://github.com/nf-core/chipseq/issues/367)] - Get rid of `CheckIfExists` for params paths.
- [[#370](https://github.com/nf-core/chipseq/issues/370)] - Fix stack overflow exceptions in phantompeakqualtools ([see here](https://github.com/kundajelab/phantompeakqualtools/issues/3)).
- [[PR #391](https://github.com/nf-core/chipseq/pull/391)] - Get rid of the `lib` folder and rearrange the pipeline accordingly.
- [[#387](https://github.com/nf-core/chipseq/issues/387)] - Get rid of the `lib` folder and rearrange the pipeline accordingly.
- [[#385](https://github.com/nf-core/chipseq/issues/385)] - Fix `--save_unaligned` description in schema.

### Software dependencies

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2 changes: 1 addition & 1 deletion nextflow_schema.json
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Expand Up @@ -261,7 +261,7 @@
"save_unaligned": {
"type": "boolean",
"fa_icon": "fas fa-save",
"description": "Where possible, save unaligned reads from either STAR, HISAT2 or Salmon to the results directory.",
"description": "Save unaligned sequences to the output directory (only available for Bowtie 2 and STAR.",
"help_text": "This may either be in the form of FastQ or BAM files depending on the options available for that particular tool."
},
"bamtools_filter_pe_config": {
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