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Clean up and removal of double slashes #402

Merged
merged 1 commit into from
Jul 11, 2024
Merged

Clean up and removal of double slashes #402

merged 1 commit into from
Jul 11, 2024

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bjlang
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@bjlang bjlang commented Jul 9, 2024 •
edited

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/chipseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@bjlang bjlang requested a review from JoseEspinosa July 9, 2024 15:45
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bjlang commented Jul 9, 2024

Double slashes in directory urls were reported as bug in nf-core/atacseq nf-core/atacseq#332

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github-actions bot commented Jul 9, 2024 •
edited

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 1bd1b15

+| ✅ 223 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • nextflow_config - Config default ignored: params.bamtools_filter_pe_config
  • nextflow_config - Config default ignored: params.bamtools_filter_se_config

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-07-09 15:48:00

JoseEspinosa
JoseEspinosa approved these changes Jul 11, 2024
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LGTM!

@JoseEspinosa JoseEspinosa merged commit 637deb5 into nf-core:dev Jul 11, 2024
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@JoseEspinosa JoseEspinosa JoseEspinosa approved these changes

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