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Several fixes #408

Merged
merged 7 commits into from
Jul 31, 2024
Merged

Several fixes #408

merged 7 commits into from
Jul 31, 2024

Commits on Jul 24, 2024

  1. Read params before including anything

    @JoseEspinosa
    JoseEspinosa committed Jul 24, 2024
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  2. Move getGenomeAttribute function to main

    @JoseEspinosa
    JoseEspinosa committed Jul 24, 2024
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  3. Also move getMacsGsize declaration

    @JoseEspinosa
    JoseEspinosa committed Jul 24, 2024
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  4. Remove includes

    @JoseEspinosa
    JoseEspinosa committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. Fix output of bwa index when provided as not compressed input

    @JoseEspinosa
    JoseEspinosa committed Jul 25, 2024
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Commits on Jul 31, 2024

  1. Make lint happy

    @JoseEspinosa
    JoseEspinosa committed Jul 31, 2024
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  2. Get rid of the functions in pipeline utils

    @JoseEspinosa
    JoseEspinosa committed Jul 31, 2024
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