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Merge pull request #83 from mirpedrol/zenodo
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fix zenodo links citing all versions
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mirpedrol authored Nov 10, 2023
2 parents 00256a2 + c0f0e74 commit 26975cf
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6 changes: 3 additions & 3 deletions README.md
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# ![nf-core/crisprseq](docs/images/nf-core-crisprseq_logo_light.png#gh-light-mode-only) ![nf-core/crisprseq](docs/images/nf-core-crisprseq_logo_dark.png#gh-dark-mode-only)

[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/crisprseq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.8116072-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.8116072)
[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/crisprseq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.7598496-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.7598496)
[![GitHub Actions CI Status](https://github.com/nf-core/crisprseq/workflows/nf-core%20CI/badge.svg)](https://github.com/nf-core/crisprseq/actions?query=workflow%3A%22nf-core+CI%22)
[![GitHub Actions Linting Status](https://github.com/nf-core/crisprseq/workflows/nf-core%20linting/badge.svg)](https://github.com/nf-core/crisprseq/actions?query=workflow%3A%22nf-core+linting%22)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/crisprseq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
[![GitHub Actions Linting Status](https://github.com/nf-core/crisprseq/workflows/nf-core%20linting/badge.svg)](https://github.com/nf-core/crisprseq/actions?query=workflow%3A%22nf-core+linting%22)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/crisprseq/results)

[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/)
[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
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## Citations

If you use nf-core/crisprseq for your analysis, please cite it using the following doi: [10.5281/zenodo.8116072](https://doi.org/10.5281/zenodo.8116072)
If you use nf-core/crisprseq for your analysis, please cite it using the following doi: [10.5281/zenodo.7598496](https://doi.org/10.5281/zenodo.7598496)

An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.

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2 changes: 1 addition & 1 deletion lib/WorkflowMain.groovy
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Expand Up @@ -12,7 +12,7 @@ class WorkflowMain {
public static String citation(workflow) {
return "If you use ${workflow.manifest.name} for your analysis please cite:\n\n" +
"* The pipeline\n" +
" https://doi.org/10.5281/zenodo.8116072\n\n" +
" https://doi.org/10.5281/zenodo.7598496\n\n" +
"* The nf-core framework\n" +
" https://doi.org/10.1038/s41587-020-0439-x\n\n" +
"* Software dependencies\n" +
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