-
Notifications
You must be signed in to change notification settings - Fork 26
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
90ffcc0
commit 699c49c
Showing
5 changed files
with
82 additions
and
74 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -27,6 +27,9 @@ params { | |
min_reads = 30 | ||
min_targeted_genes = 3 | ||
rra = false | ||
mle = false | ||
drugz = false | ||
bagel2 = false | ||
bagel_reference_essentials = 'https://raw.githubusercontent.com/hart-lab/bagel/master/CEGv2.txt' | ||
bagel_reference_nonessentials = 'https://raw.githubusercontent.com/hart-lab/bagel/master/NEGv1.txt' | ||
drugz = null | ||
|
@@ -232,7 +235,6 @@ singularity.registry = 'quay.io' | |
// Nextflow plugins | ||
plugins { | ||
id '[email protected]' // Validation of pipeline parameters and creation of an input channel from a sample sheet | ||
id '[email protected]' | ||
} | ||
|
||
// Load igenomes.config if required | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters