Merge pull request #65 from mirpedrol/remove-samtools-faidx

Remove samtools/faidx
nf-core · Aug 3, 2023 · 8dbbcfd · 8dbbcfd
2 parents 61b5fe3 + 6f59fa0
commit 8dbbcfd
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Showing 4 changed files with 0 additions and 97 deletions.
diff --git a/modules.json b/modules.json
@@ -102,11 +102,6 @@
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["modules"]
                     },
-                    "samtools/faidx": {
-                        "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": ["modules"]
-                    },
                     "samtools/index": {
                         "branch": "master",
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",

diff --git a/modules/nf-core/samtools/faidx/main.nf b/modules/nf-core/samtools/faidx/main.nf
diff --git a/modules/nf-core/samtools/faidx/meta.yml b/modules/nf-core/samtools/faidx/meta.yml
diff --git a/workflows/crisprseq_targeted.nf b/workflows/crisprseq_targeted.nf
@@ -75,7 +75,6 @@ include { MINIMAP2_ALIGN as MINIMAP2_ALIGN_ORIGINAL } from '../modules/nf-core/m
 include { MINIMAP2_ALIGN as MINIMAP2_ALIGN_UMI_1    } from '../modules/nf-core/minimap2/align/main'
 include { MINIMAP2_ALIGN as MINIMAP2_ALIGN_UMI_2    } from '../modules/nf-core/minimap2/align/main'
 include { MINIMAP2_ALIGN as MINIMAP2_ALIGN_TEMPLATE } from '../modules/nf-core/minimap2/align/main'
-include { SAMTOOLS_FAIDX                            } from '../modules/nf-core/samtools/faidx/main'
 include { MINIMAP2_INDEX                            } from '../modules/nf-core/minimap2/index/main'
 include { MEDAKA                                    } from '../modules/nf-core/medaka/main'
 include { CUTADAPT                                  } from '../modules/nf-core/cutadapt/main'