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new release patch #100

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merged 3 commits into from
Dec 14, 2023
Merged

new release patch #100

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0e4573f
new release
LaurenceKuhl Dec 14, 2023
bfcc005
Merge branch 'dev' into dev
LaurenceKuhl Dec 14, 2023
aba6e3c
remove fastqc that was ran two times
LaurenceKuhl Dec 14, 2023
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7 changes: 6 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -3,11 +3,16 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [v2.2.0dev]
## [v2.1.1 - Jamon Salas - patch](https://github.com/nf-core/crisprseq/releases/tag/2.1.1) - [14.12.2023]

### Added

- Update all modules to the last version in nf-core/modules ([#92](https://github.com/nf-core/crisprseq/pull/92))
- Added cutadapt for screening analysis ([#95](https://github.com/nf-core/crisprseq/pull/95))

### Fixed

- Fixed paired-end for screening analysis ([#94](https://github.com/nf-core/crisprseq/pull/94))

## [v2.1.0 - Jamon Salas](https://github.com/nf-core/crisprseq/releases/tag/2.1.0) - [14.11.2023]

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4 changes: 2 additions & 2 deletions assets/multiqc_config.yml
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@@ -1,7 +1,7 @@
report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/crisprseq/releases/tag/dev" target="_blank">nf-core/crisprseq</a>
This report has been generated by the <a href="https://github.com/nf-core/crisprseq/releases/tag/2.1.1" target="_blank">nf-core/crisprseq</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/crisprseq/dev/docs/output" target="_blank">documentation</a>.
<a href="https://nf-co.re/crisprseq/2.1.1/docs/output" target="_blank">documentation</a>.
report_section_order:
"nf-core-crisprseq-methods-description":
order: -1000
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -267,7 +267,7 @@ manifest {
description = """Pipeline for the analysis of CRISPR data"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '2.2.0dev'
version = '2.1.1'
doi = 'https://doi.org/10.5281/zenodo.7598496'
}

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12 changes: 0 additions & 12 deletions workflows/crisprseq_screening.nf
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Expand Up @@ -141,18 +141,6 @@ workflow CRISPRSEQ_SCREENING {
.last()
.set { joined }

//
// MODULE: Run FastQC
//
FASTQC (
ch_input
)


ch_versions = ch_versions.mix(FASTQC.out.versions.first())



//
// MODULE: Run mageck count
//
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