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Make the gene essentiality usage more user friendly #194

Merged
merged 21 commits into from
Sep 6, 2024
Merged

Make the gene essentiality usage more user friendly #194

merged 21 commits into from
Sep 6, 2024

Commits on Sep 2, 2024

  1. very early version of nf-gpt implementation

    Leon Hornich authored and Leon Hornich committed Sep 2, 2024
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  2. fixed some linting test errors

    Leon Hornich authored and Leon Hornich committed Sep 2, 2024
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  3. fixed more linting test errors

    Leon Hornich authored and Leon Hornich committed Sep 2, 2024
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  4. Add the nf-gpt version in the nextflow config

    @LaurenceKuhl
    LaurenceKuhl committed Sep 2, 2024
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Commits on Sep 5, 2024

  1. Merge branch 'dev' of https://github.com/nf-core/crisprseq into dev

    @LaurenceKuhl
    LaurenceKuhl committed Sep 5, 2024
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  2. Run prettier

    @LaurenceKuhl
    LaurenceKuhl committed Sep 5, 2024
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  3. Remove the gpt input

    @LaurenceKuhl
    LaurenceKuhl committed Sep 5, 2024
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  4. update CHANGELOG

    @LaurenceKuhl
    LaurenceKuhl committed Sep 5, 2024
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  5. Drop down the hitselection interation

    @LaurenceKuhl
    LaurenceKuhl committed Sep 5, 2024
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Commits on Sep 6, 2024

  1. Fix the input so that all processes run

    @LaurenceKuhl
    LaurenceKuhl committed Sep 6, 2024
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  2. Delete templates/collect_gene_ids.py

    @LaurenceKuhl
    LaurenceKuhl authored Sep 6, 2024
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  3. Update workflows/crisprseq_screening.nf 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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  4. Update docs/usage/screening.md 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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  5. Update docs/usage/screening.md 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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  6. Update workflows/crisprseq_screening.nf 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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  7. Update docs/usage/screening.md 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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  8. Update docs/usage/screening.md 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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  9. Update nextflow_schema.json 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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  10. Update nextflow_schema.json 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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  11. Update workflows/crisprseq_screening.nf 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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  12. Update docs/usage/screening.md 

    [skip ci]

Co-authored-by: Jasmin Frangenberg <[email protected]>
    @LaurenceKuhl @jasmezz
    LaurenceKuhl and jasmezz authored Sep 6, 2024
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