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DSL2: Add mapAD #1072

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Enable fastq sharding for mapAD
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jch-13 committed Mar 21, 2025
commit f2758d3302d546dd5b7ee2114bdd7106a125a6a5
2 changes: 1 addition & 1 deletion subworkflows/local/map.nf
Original file line number Diff line number Diff line change
@@ -116,7 +116,7 @@ workflow MAP {
ch_mapped_lane_bam = CIRCULARMAPPER.out.bam
ch_mapped_lane_bai = CIRCULARMAPPER.out.bai // [ [ meta ], bai/csi ]
} else if ( params.mapping_tool == 'mapad' ) {
ch_input_for_mapping = reads
ch_input_for_mapping = ch_input_for_mapping
.combine( index.map{ meta, index, fasta -> [ meta, index ] } )
.multiMap {
meta, reads, meta2, index ->