Merge pull request #34 from carpanz/dev

Fixed as suggested in review
nf-core · May 15, 2023 · 115bd96 · 115bd96
2 parents 077e54b + 5d1f56f
commit 115bd96
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Showing 4 changed files with 7 additions and 7 deletions.
diff --git a/modules/local/parseoutputs/main.nf b/modules/local/parseoutputs/main.nf
@@ -4,8 +4,8 @@ process PARSEOUTPUTS {
 
     conda "bioconda::samtools=1.17"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/samtools:1.15.1--h1170115_0' :
-        'quay.io/biocontainers/samtools:1.15.1--h1170115_0' }"
+        'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' :
+        'biocontainers/samtools:1.17--h00cdaf9_0' }"
 
     input:
     tuple val(meta), path(bam)

diff --git a/modules/local/samtools/fastqlocal/main.nf b/modules/local/samtools/fastqlocal/main.nf
@@ -4,8 +4,8 @@ process SAMTOOLS_FASTQ {
 
     conda "bioconda::samtools=1.17"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/samtools:1.15.1--h1170115_0' :
-        'quay.io/biocontainers/samtools:1.15.1--h1170115_0' }"
+        'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' :
+        'biocontainers/samtools:1.17--h00cdaf9_0' }"
 
     input:
     tuple val(meta), path(bam)

diff --git a/modules/local/samtools/viewsingle/main.nf b/modules/local/samtools/viewsingle/main.nf
@@ -4,8 +4,8 @@ process SAMTOOLS_VIEW_SINGLE {
 
     conda "bioconda::samtools=1.17"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/samtools:1.15.1--h1170115_0' :
-        'quay.io/biocontainers/samtools:1.15.1--h1170115_0' }"
+        'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' :
+        'biocontainers/samtools:1.17--h00cdaf9_0' }"
 
     input:
     tuple val(meta), path(input), path(index)

diff --git a/nextflow.config b/nextflow.config
@@ -237,7 +237,7 @@ manifest {
     description     = """A pipeline to investigate horizontal gene transfer from NGS data"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=22.10.1'
-    version = '1.1.0'
+    version         = '1.1.0'
     doi             = ''
 }