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53 Open 218 Closed
53 Open 218 Closed
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Issues list

Failed to create Conda environment in the test run bug Something isn't working
#657 opened Aug 22, 2024 by camillevleal
2
Consider CarpeDeam for (ancient DNA) damage aware assembler enhancement New feature or request
#650 opened Aug 12, 2024 by jfy133
Option to skip DasTool unbinned contigs enhancement New feature or request
#649 opened Aug 6, 2024 by zackhenny
Update metaspades to 4.0.0 bug Something isn't working
#640 opened Jul 24, 2024 by elsherbini
GTDBTK_CLASSIFYWF process does not put the summary.tsv file in the output directory bug Something isn't working
#637 opened Jul 16, 2024 by jhayer
4
Upgrade gtdbtk to version 2.4.0 and use reference data release220 enhancement New feature or request
#627 opened Jun 6, 2024 by amizeranschi
Add module pyrodigal enhancement New feature or request
#624 opened Jun 3, 2024 by jasmezz
Enter at postbinning stage enhancement New feature or request
#623 opened Jun 3, 2024 by prototaxites
9
Allow Prodigal to create a gbk file instead of the gff enhancement New feature or request
#622 opened Jun 3, 2024 by amizeranschi
CAT_DB process has harcoded CAT subdirectory names bug Something isn't working
#611 opened Apr 18, 2024 by maxibor
1
Genome taxnomic classification with Sourmash enhancement New feature or request
#609 opened Apr 5, 2024 by prototaxites
3
Replace CheckM with CheckM2
#607 opened Mar 22, 2024 by CarsonJM
1
Improve documentation on the effects of completeness/contamination filters enhancement New feature or request
#606 opened Mar 22, 2024 by jfy133
add diamond support to mag WIP Work in progress
#604 opened Mar 19, 2024 by MatthewJM96
@MatthewJM96
Bins in CheckM summary do not match bins in bin depths summary bug Something isn't working
#603 opened Mar 17, 2024 by QingDAI0225
7
Error in executing PROKKA
#601 opened Mar 13, 2024 by anugos
4
Pipeline fails if only CONCOCT is turned on and other binners off bug Something isn't working
#590 opened Feb 16, 2024 by jfy133
Add documentation detailing phageome/virome analysis
#589 opened Feb 14, 2024 by CarsonJM
@CarsonJM
Expanded documentation for nf-core/mag use cases & downstream analysis docs enhancement New feature or request
#588 opened Feb 14, 2024 by CarsonJM
Add coverm/contig and coverm/genome as options for calculating read alignment metrics enhancement New feature or request
#587 opened Feb 14, 2024 by CarsonJM
@CarsonJM
Add StrainXpress assembler enhancement New feature or request
#580 opened Feb 8, 2024 by maxibor
Is there any database we need to download? support
#554 opened Jan 2, 2024 by feixiang1209
13
Tiara is not included in bin_summary enhancement New feature or request
#544 opened Nov 21, 2023 by maxibor
@maxibor
1
Consider using collectFile to optimise aggregating of results of bin statistics steps enhancement New feature or request
#532 opened Nov 3, 2023 by jfy133
--postbinning_input to include only bins (no unassembled contigs) enhancement New feature or request
#528 opened Oct 16, 2023 by patriciatran
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