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Add new module: Flye #1164

Merged
merged 35 commits into from
Jun 30, 2022
Merged

Add new module: Flye #1164

merged 35 commits into from
Jun 30, 2022

Commits on Oct 29, 2021

  1. changing mv by gzip

    @mirpedrol
    mirpedrol committed Oct 29, 2021
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  2. changing mv by gzip

    @mirpedrol
    mirpedrol committed Oct 29, 2021
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Commits on Dec 13, 2021

  1. first module creation

    @mirpedrol
    mirpedrol committed Dec 13, 2021
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  2. add test.yml

    @mirpedrol
    mirpedrol committed Dec 13, 2021
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  3. Merge branch 'flye' of https://github.com/asthara10/modules into flye

    @mirpedrol
    mirpedrol committed Dec 13, 2021
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Commits on Jun 10, 2022

  1. update changes

    @mirpedrol
    mirpedrol committed Jun 10, 2022
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  2. add flye to pyestes_modules.yml

    @mirpedrol
    mirpedrol committed Jun 10, 2022
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  3. update flye module

    @mirpedrol
    mirpedrol committed Jun 10, 2022
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  4. delete functions.nf

    @mirpedrol
    mirpedrol committed Jun 10, 2022
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  5. generate test.yml

    @mirpedrol
    mirpedrol committed Jun 10, 2022
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  6. Apply changes made in gitpod 

    Merge branch 'flye' of https://github.com/mirpedrol/modules into flye
    @mirpedrol
    mirpedrol committed Jun 10, 2022
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  7. fix contains from test.yml

    @mirpedrol
    mirpedrol committed Jun 10, 2022
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Commits on Jun 13, 2022

  1. test file assembly_info.txt with regex

    @mirpedrol
    mirpedrol committed Jun 13, 2022
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  2. check that file contains at least contig_1

    @mirpedrol
    mirpedrol committed Jun 13, 2022
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  3. fix typo in contains

    @mirpedrol
    mirpedrol committed Jun 13, 2022
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  4. Merge branch 'master' into flye

    @mirpedrol
    mirpedrol committed Jun 13, 2022
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  5. update version

    @mirpedrol
    mirpedrol committed Jun 13, 2022
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Commits on Jun 14, 2022

  1. split fastq file for raw runs

    @mirpedrol
    mirpedrol committed Jun 14, 2022
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Commits on Jun 29, 2022

  1. use asm-coverage to reduce memory usage

    @mirpedrol
    mirpedrol committed Jun 29, 2022
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  2. fix module name error

    @mirpedrol
    mirpedrol committed Jun 29, 2022
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  3. add genome-size

    @mirpedrol
    mirpedrol committed Jun 29, 2022
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  4. decrease coverage

    @mirpedrol
    mirpedrol committed Jun 29, 2022
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  5. change test data for raw runs

    @mirpedrol
    mirpedrol committed Jun 29, 2022
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  6. add coverage and genome size

    @mirpedrol
    mirpedrol committed Jun 29, 2022
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  7. Apply comments from code review 

    Co-authored-by: SusiJo <[email protected]>
    @mirpedrol @SusiJo
    mirpedrol and SusiJo committed Jun 29, 2022
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  8. after many trys, add a stub run

    @mirpedrol
    mirpedrol committed Jun 29, 2022
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  9. remove md5sum for stub run

    @mirpedrol
    mirpedrol committed Jun 29, 2022
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  10. Merge branch 'master' into flye

    @mirpedrol
    mirpedrol committed Jun 29, 2022
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Commits on Jun 30, 2022

  1. Merge branch 'master' into flye

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  2. Apply suggestions from code review 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @mirpedrol @jfy133
    mirpedrol and jfy133 committed Jun 30, 2022
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  3. fix review comments

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  4. Apply suggestions from code review 

    Co-authored-by: SusiJo <[email protected]>
    @mirpedrol @SusiJo
    mirpedrol and SusiJo committed Jun 30, 2022
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  5. no hardcoded version in stub run

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  6. Update modules/flye/main.nf 

    Co-authored-by: Mahesh Binzer-Panchal <[email protected]>
    @mirpedrol @mahesh-panchal
    mirpedrol and mahesh-panchal committed Jun 30, 2022
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  7. Merge branch 'master' into flye

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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