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Trycycler cluster #5670

Merged
merged 5 commits into from
May 25, 2024
Merged

Trycycler cluster #5670

merged 5 commits into from
May 25, 2024

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watsonar
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PR checklist

Contributes second trycycler command (trycycler cluster) for #829
Still need to add trycycler reconcile, msa, partition, and consensus

Includes nf-tests, and a stub, and an nf-test for the stub.

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@watsonar watsonar requested a review from a team as a code owner May 22, 2024 19:16
@watsonar watsonar requested review from CarsonJM and removed request for a team May 22, 2024 19:16
@SPPearce SPPearce added this pull request to the merge queue May 25, 2024
Merged via the queue into nf-core:master with commit e788348 May 25, 2024
16 checks passed
@watsonar watsonar deleted the trycycler-cluster branch May 28, 2024 14:49
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3 participants