3.0.0

Main changes:

• Squid and pizzly are no longuer supported
• Removed --fusioninspector_filter and --fusionreport_filter in favor of --tools_cutoff (default = 1, no filters applied)
• Removed FusionGDB from fusion-report
• Improved vcf file creation, using --annotate --examine_coding_effect with fusioninspector to collect more data
• Removed harsh trimming option, fastp trimming still available
• Removed qualimap rna_seq

Bug fixes:

• building references is possible without a samplesheet
• Fix channel i/o issue in StringTie workflow
• Various fusion-report issues with download
• Improved CI