[skip ci] Dev -> Master for 3.15.0 #2877

Run time

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Job	Run time
Check for changes	47s
Check for changes	47s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-latest-everything	59s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-latest-everything	59s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-latest-everything	40s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-latest-everything	40s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-latest-everything	44s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-latest-everything	44s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything	1m 34s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything	1m 34s
subworkflows/local/align_star/tests/main.nf.test docker NF-latest-everything	2m 41s
subworkflows/local/align_star/tests/main.nf.test docker NF-latest-everything	2m 41s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything	1m 26s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything	1m 26s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything	49s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything	49s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-latest-everything	51s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-latest-everything	51s
modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything	1m 20s
modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything	1m 24s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything	38s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything	38s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything	1m 23s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything	1m 23s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything	39s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything	39s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything	1m 3s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything	1m 3s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything	3m 46s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything	3m 46s
tests/min_mapped_reads.nf.test docker NF-latest-everything	10m 38s
tests/min_mapped_reads.nf.test docker NF-latest-everything	10m 38s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything	4m 3s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything	4m 3s
tests/featurecounts_group_type.nf.test docker NF-latest-everything	11m 40s
tests/featurecounts_group_type.nf.test docker NF-latest-everything	11m 40s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything	19s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything	19s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-latest-everything	55s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-latest-everything	55s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything	1m 50s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything	1m 50s
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything	1m 28s
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything	1m 28s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything	2m 11s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything	2m 11s
tests/salmon.nf.test docker NF-latest-everything	5m 28s
tests/salmon.nf.test docker NF-latest-everything	5m 28s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything	2m 17s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything	2m 17s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything	1m 20s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything	1m 20s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything	41s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything	41s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything	1m 51s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything	1m 51s
modules/local/gtf_filter/tests/main.nf.test docker NF-latest-everything	49s
modules/local/gtf_filter/tests/main.nf.test docker NF-latest-everything	49s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-latest-everything	1m 3s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-latest-everything	1m 3s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything	1m 6s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything	1m 6s
modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything	1m 34s
modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything	1m 34s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything	1m 0s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything	1m 0s
tests/star_rsem.nf.test docker NF-latest-everything	10m 58s
tests/star_rsem.nf.test docker NF-latest-everything	10m 58s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything	55s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything	55s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-latest-everything	2m 20s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-latest-everything	2m 20s
tests/kallisto.nf.test docker NF-latest-everything	5m 39s
tests/kallisto.nf.test docker NF-latest-everything	5m 39s
modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything	1m 6s
modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything	1m 6s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything	43s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything	43s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-latest-everything	9m 20s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-latest-everything	9m 20s
tests/skip_qc.nf.test docker NF-latest-everything	9m 17s
tests/skip_qc.nf.test docker NF-latest-everything	9m 17s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything	1m 6s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything	1m 6s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-latest-everything	1m 0s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-latest-everything	1m 0s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-latest-everything	1m 34s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-latest-everything	1m 34s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything	38s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything	38s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything	3m 29s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything	3m 29s
modules/local/deseq2_qc/tests/main.nf.test docker NF-latest-everything	1m 16s
modules/local/deseq2_qc/tests/main.nf.test docker NF-latest-everything	1m 16s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-latest-everything	1m 56s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-latest-everything	1m 56s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything	2m 18s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything	2m 18s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything	40s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything	40s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything	1m 1s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything	1m 1s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything	29s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything	29s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything	54s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything	54s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything	48s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything	48s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-latest-everything	31s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-latest-everything	31s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-latest-everything	1m 37s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-latest-everything	1m 37s
modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything	1m 11s
modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything	1m 11s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything	1m 9s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything	1m 9s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-latest-everything	1m 57s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-latest-everything	1m 57s
modules/local/gtf2bed/tests/main.nf.test docker NF-latest-everything	35s
modules/local/gtf2bed/tests/main.nf.test docker NF-latest-everything	35s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything	35s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything	35s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything	49s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything	49s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything	38s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything	38s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything	2m 20s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything	2m 20s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything	48s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything	48s
tests/hisat2.nf.test docker NF-latest-everything	9m 14s
tests/hisat2.nf.test docker NF-latest-everything	9m 14s
modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything	3m 13s
modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything	3m 13s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything	38s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything	38s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything	52s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything	52s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything	32s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything	32s
tests/remove_ribo_rna.nf.test docker NF-latest-everything	16m 9s
tests/remove_ribo_rna.nf.test docker NF-latest-everything	16m 9s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything	44s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything	44s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything	1m 10s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything	1m 10s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything	1m 17s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything	1m 17s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything	40s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything	40s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything	1m 39s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything	1m 39s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything	4m 25s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything	4m 25s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-latest-everything	30s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-latest-everything	30s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-latest-everything	1m 24s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-latest-everything	1m 24s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything	1m 8s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything	1m 8s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything	52s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything	52s
modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything	9m 11s
modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything	9m 11s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything	47s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything	47s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything	11m 36s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything	11m 36s
tests/skip_trimming.nf.test docker NF-latest-everything	10m 44s
tests/skip_trimming.nf.test docker NF-latest-everything	10m 44s
tests/default.nf.test docker NF-latest-everything	11m 25s
tests/default.nf.test docker NF-latest-everything	11m 25s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything	1m 43s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything	1m 43s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything	1m 0s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything	1m 0s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything	2m 12s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything	2m 12s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything	1m 49s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything	1m 49s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything	1m 7s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything	1m 7s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything	1m 29s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything	1m 29s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything	59s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything	59s
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything	2m 52s
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything	2m 52s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-latest-everything	1m 56s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-latest-everything	1m 56s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-23.04	1m 13s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-23.04	1m 13s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-23.04	38s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-23.04	38s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-23.04	43s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-23.04	43s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-23.04	1m 24s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-23.04	1m 24s
subworkflows/local/align_star/tests/main.nf.test docker NF-23.04	2m 37s
subworkflows/local/align_star/tests/main.nf.test docker NF-23.04	2m 37s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-23.04	1m 18s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-23.04	1m 18s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-23.04	1m 2s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-23.04	1m 2s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-23.04	55s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-23.04	55s
modules/nf-core/dupradar/tests/main.nf.test docker NF-23.04	1m 19s
modules/nf-core/dupradar/tests/main.nf.test docker NF-23.04	1m 31s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04	42s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04	42s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-23.04	1m 36s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-23.04	1m 36s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-23.04	38s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-23.04	38s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-23.04	58s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-23.04	58s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-23.04	3m 52s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-23.04	3m 52s
tests/min_mapped_reads.nf.test docker NF-23.04	10m 35s
tests/min_mapped_reads.nf.test docker NF-23.04	10m 35s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-23.04	4m 19s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-23.04	4m 19s
tests/featurecounts_group_type.nf.test docker NF-23.04	11m 30s
tests/featurecounts_group_type.nf.test docker NF-23.04	11m 30s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04	37s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04	37s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-23.04	1m 17s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-23.04	1m 17s
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04	1m 31s
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04	1m 31s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-23.04	1m 39s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-23.04	1m 39s
tests/salmon.nf.test docker NF-23.04	5m 28s
tests/salmon.nf.test docker NF-23.04	5m 28s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-23.04	2m 15s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-23.04	2m 15s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-23.04	1m 7s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-23.04	1m 7s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-23.04	44s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-23.04	44s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-23.04	2m 0s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-23.04	2m 0s
modules/local/gtf_filter/tests/main.nf.test docker NF-23.04	41s
modules/local/gtf_filter/tests/main.nf.test docker NF-23.04	41s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-23.04	52s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-23.04	52s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-23.04	1m 5s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-23.04	1m 5s
modules/nf-core/gffread/tests/main.nf.test docker NF-23.04	1m 38s
modules/nf-core/gffread/tests/main.nf.test docker NF-23.04	1m 38s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-23.04	1m 21s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-23.04	1m 21s
tests/star_rsem.nf.test docker NF-23.04	11m 21s
tests/star_rsem.nf.test docker NF-23.04	11m 21s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-23.04	49s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-23.04	49s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-23.04	1m 59s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-23.04	1m 59s
tests/kallisto.nf.test docker NF-23.04	5m 40s
tests/kallisto.nf.test docker NF-23.04	5m 40s
modules/nf-core/untar/tests/main.nf.test docker NF-23.04	1m 8s
modules/nf-core/untar/tests/main.nf.test docker NF-23.04	1m 8s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04	47s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04	47s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-23.04	9m 30s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-23.04	9m 30s
tests/skip_qc.nf.test docker NF-23.04	8m 58s
tests/skip_qc.nf.test docker NF-23.04	8m 58s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-23.04	1m 6s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-23.04	1m 6s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-23.04	51s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-23.04	51s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-23.04	1m 21s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-23.04	1m 21s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-23.04	35s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-23.04	35s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-23.04	3m 38s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-23.04	3m 38s
modules/local/deseq2_qc/tests/main.nf.test docker NF-23.04	1m 27s
modules/local/deseq2_qc/tests/main.nf.test docker NF-23.04	1m 27s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-23.04	1m 46s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-23.04	1m 46s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-23.04	2m 44s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-23.04	2m 44s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-23.04	56s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-23.04	56s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04	1m 2s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04	1m 2s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-23.04	32s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-23.04	32s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-23.04	54s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-23.04	54s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-23.04	51s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-23.04	51s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-23.04	33s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-23.04	33s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-23.04	1m 31s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-23.04	1m 31s
modules/nf-core/gunzip/tests/main.nf.test docker NF-23.04	1m 4s
modules/nf-core/gunzip/tests/main.nf.test docker NF-23.04	1m 4s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-23.04	1m 4s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-23.04	1m 4s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-23.04	1m 53s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-23.04	1m 53s
modules/local/gtf2bed/tests/main.nf.test docker NF-23.04	39s
modules/local/gtf2bed/tests/main.nf.test docker NF-23.04	39s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-23.04	42s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-23.04	42s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-23.04	51s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-23.04	51s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-23.04	38s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-23.04	38s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04	2m 17s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04	2m 17s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-23.04	52s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-23.04	52s
tests/hisat2.nf.test docker NF-23.04	9m 31s
tests/hisat2.nf.test docker NF-23.04	9m 31s
modules/nf-core/fastp/tests/main.nf.test docker NF-23.04	3m 19s
modules/nf-core/fastp/tests/main.nf.test docker NF-23.04	3m 19s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-23.04	41s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-23.04	41s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-23.04	53s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-23.04	53s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04	42s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04	42s
tests/remove_ribo_rna.nf.test docker NF-23.04	16m 2s
tests/remove_ribo_rna.nf.test docker NF-23.04	16m 2s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-23.04	58s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-23.04	58s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-23.04	1m 26s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-23.04	1m 26s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-23.04	1m 22s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-23.04	1m 22s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-23.04	57s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-23.04	1m 37s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-23.04	1m 37s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04	4m 36s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04	4m 36s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-23.04	39s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-23.04	39s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-23.04	1m 20s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-23.04	1m 20s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-23.04	1m 4s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-23.04	1m 4s
modules/nf-core/star/align/tests/main.nf.test docker NF-23.04	9m 44s
modules/nf-core/star/align/tests/main.nf.test docker NF-23.04	9m 44s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-23.04	58s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-23.04	58s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-23.04	12m 54s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-23.04	12m 54s
tests/skip_trimming.nf.test docker NF-23.04	10m 38s
tests/skip_trimming.nf.test docker NF-23.04	10m 38s
tests/default.nf.test docker NF-23.04	11m 50s
tests/default.nf.test docker NF-23.04	11m 50s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-23.04	1m 43s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-23.04	1m 43s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04	57s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04	57s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-23.04	2m 7s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-23.04	2m 7s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-23.04	1m 40s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-23.04	1m 40s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04	1m 10s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04	1m 10s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-23.04	1m 30s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-23.04	1m 30s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04	2m 32s
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04	2m 32s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-23.04	1m 59s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-23.04	1m 59s
confirm-pass	1s
confirm-pass	1s
	16h 15m 38s

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