Add all nf-core modules and CI/CD and all nf-tests to everything #2276
pinin4fjordsAnnotations
71 errors and 121 warnings
|
KALLISTO_INDEX docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
GUNZIP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
PRESEQ_LCEXTRAP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
CUSTOM_TX2GENE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
BAM_SORT_STATS_SAMTOOLS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
HISAT2_BUILD docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
CUSTOM_CATADDITIONALFASTA docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
CUSTOM_GETCHROMSIZES docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
KALLISTO_QUANT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEM_PREPAREREFERENCE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
BBMAP_BBSPLIT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
HISAT2_EXTRACTSPLICESITES docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
QUALIMAP_RNASEQ docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
BAM_MARKDUPLICATES_PICARD docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
FQ_SUBSAMPLE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
BAM_RSEQC docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
CAT_FASTQ docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
HISAT2_ALIGN docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
FASTQ_ALIGN_HISAT2 docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEQC_BAMSTAT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
SAMTOOLS_FLAGSTAT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
SAMTOOLS_IDXSTATS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
SALMON_INDEX docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEQC_INFEREXPERIMENT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
MULTIQC docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEQC_INNERDISTANCE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEQC_JUNCTIONSATURATION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
Process completed with exit code 1.
|
|
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
Process completed with exit code 1.
|
|
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEQC_READDISTRIBUTION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEQC_JUNCTIONANNOTATION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEQC_READDUPLICATION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
SAMTOOLS_SORT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEQC_TIN docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
UCSC_BEDCLIP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
PICARD_MARKDUPLICATES docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
SAMTOOLS_STATS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
SAMTOOLS_INDEX docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
STAR_GENOMEGENERATE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
SUBREAD_FEATURECOUNTS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
SALMON_QUANT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
UCSC_BEDGRAPHTOBIGWIG docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
Process completed with exit code 1.
|
|
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
Process completed with exit code 1.
|
|
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
RSEM_CALCULATEEXPRESSION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
BAM_STATS_SAMTOOLS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
UTILS_NFVALIDATION_PLUGIN docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
FASTP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
TXIMETA_TXIMPORT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
SORTMERNA docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
UTILS_NEXTFLOW_PIPELINE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
UTILS_NFCORE_PIPELINE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
FASTQC docker NF-23.04.0
Process completed with exit code 1.
|
|
FASTQC docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
FASTQC docker NF-23.04.0
Process completed with exit code 1.
|
|
TRIMGALORE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
TRIMGALORE docker NF-23.04.0
Process completed with exit code 1.
|
|
TRIMGALORE docker NF-23.04.0
Process completed with exit code 1.
|
|
UMITOOLS_EXTRACT docker NF-23.04.0
Process completed with exit code 1.
|
|
UMITOOLS_EXTRACT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
UMITOOLS_EXTRACT docker NF-23.04.0
Process completed with exit code 1.
|
|
SUMMARIZEDEXPERIMENT_SUMMARIZEDEXPERIMENT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
UNTAR docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
STAR_ALIGN docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
|
|
confirm-pass
Process completed with exit code 1.
|
|
Check for changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
KALLISTO_INDEX docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
KALLISTO_INDEX docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
GUNZIP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
GUNZIP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
PRESEQ_LCEXTRAP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
PRESEQ_LCEXTRAP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
CUSTOM_TX2GENE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
CUSTOM_TX2GENE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
BAM_SORT_STATS_SAMTOOLS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
BAM_SORT_STATS_SAMTOOLS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
HISAT2_BUILD docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
HISAT2_BUILD docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
CUSTOM_CATADDITIONALFASTA docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
CUSTOM_CATADDITIONALFASTA docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
CUSTOM_GETCHROMSIZES docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
CUSTOM_GETCHROMSIZES docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
KALLISTO_QUANT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
KALLISTO_QUANT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEM_PREPAREREFERENCE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEM_PREPAREREFERENCE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
BBMAP_BBSPLIT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
BBMAP_BBSPLIT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
HISAT2_EXTRACTSPLICESITES docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
HISAT2_EXTRACTSPLICESITES docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
QUALIMAP_RNASEQ docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
QUALIMAP_RNASEQ docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
BAM_MARKDUPLICATES_PICARD docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
BAM_MARKDUPLICATES_PICARD docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
FQ_SUBSAMPLE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
FQ_SUBSAMPLE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
BAM_RSEQC docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
BAM_RSEQC docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
CAT_FASTQ docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
CAT_FASTQ docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
HISAT2_ALIGN docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
HISAT2_ALIGN docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
FASTQ_ALIGN_HISAT2 docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
FASTQ_ALIGN_HISAT2 docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEQC_BAMSTAT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEQC_BAMSTAT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SAMTOOLS_FLAGSTAT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SAMTOOLS_FLAGSTAT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SAMTOOLS_IDXSTATS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SAMTOOLS_IDXSTATS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SALMON_INDEX docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SALMON_INDEX docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEQC_INFEREXPERIMENT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEQC_INFEREXPERIMENT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
MULTIQC docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
MULTIQC docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEQC_INNERDISTANCE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEQC_INNERDISTANCE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEQC_JUNCTIONSATURATION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEQC_JUNCTIONSATURATION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEQC_READDISTRIBUTION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEQC_READDISTRIBUTION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEQC_JUNCTIONANNOTATION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEQC_JUNCTIONANNOTATION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEQC_READDUPLICATION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEQC_READDUPLICATION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SAMTOOLS_SORT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SAMTOOLS_SORT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEQC_TIN docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEQC_TIN docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
UCSC_BEDCLIP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UCSC_BEDCLIP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
PICARD_MARKDUPLICATES docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
PICARD_MARKDUPLICATES docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SAMTOOLS_STATS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SAMTOOLS_STATS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SAMTOOLS_INDEX docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SAMTOOLS_INDEX docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
STAR_GENOMEGENERATE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
STAR_GENOMEGENERATE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SUBREAD_FEATURECOUNTS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SUBREAD_FEATURECOUNTS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SALMON_QUANT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SALMON_QUANT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
UCSC_BEDGRAPHTOBIGWIG docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UCSC_BEDGRAPHTOBIGWIG docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
RSEM_CALCULATEEXPRESSION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
RSEM_CALCULATEEXPRESSION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
BAM_STATS_SAMTOOLS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
BAM_STATS_SAMTOOLS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
UTILS_NFVALIDATION_PLUGIN docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UTILS_NFVALIDATION_PLUGIN docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
FASTP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
FASTP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
TXIMETA_TXIMPORT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
TXIMETA_TXIMPORT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SORTMERNA docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SORTMERNA docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
UTILS_NEXTFLOW_PIPELINE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UTILS_NEXTFLOW_PIPELINE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
UTILS_NFCORE_PIPELINE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UTILS_NFCORE_PIPELINE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
FASTQC docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
FASTQC docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
TRIMGALORE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
TRIMGALORE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
UMITOOLS_EXTRACT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UMITOOLS_EXTRACT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
SUMMARIZEDEXPERIMENT_SUMMARIZEDEXPERIMENT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SUMMARIZEDEXPERIMENT_SUMMARIZEDEXPERIMENT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
UNTAR docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UNTAR docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
STAR_ALIGN docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
STAR_ALIGN docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|