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Add all nf-core modules and CI/CD and all nf-tests to everything #2277

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Add all nf-core modules and CI/CD and all nf-tests to everything

Add all nf-core modules and CI/CD and all nf-tests to everything #2277

Triggered via pull request March 1, 2024 14:09
@maxulyssemaxulysse
synchronize #1221
adamrtalbot:nf-test-cicd
Status Failure
Total duration 1h 16m 35s
Artifacts –

ci.yml

on: pull_request
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Matrix: test
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80 errors and 127 warnings
CUSTOM_CATADDITIONALFASTA docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
KALLISTO_INDEX docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
HISAT2_BUILD docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SAMTOOLS_FLAGSTAT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SALMON_INDEX docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
HISAT2_EXTRACTSPLICESITES docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CUSTOM_GETCHROMSIZES docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SAMTOOLS_SORT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
PRESEQ_LCEXTRAP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
GUNZIP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
BAM_SORT_STATS_SAMTOOLS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
KALLISTO_QUANT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
UCSC_BEDCLIP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
GFFREAD docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
GFFREAD docker NF-23.04.0
Process completed with exit code 1.
GFFREAD docker NF-23.04.0
Process completed with exit code 1.
RSEQC_TIN docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RSEQC_JUNCTIONSATURATION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
BBMAP_BBSPLIT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SAMTOOLS_IDXSTATS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
UCSC_BEDGRAPHTOBIGWIG docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RSEQC_READDISTRIBUTION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RSEQC_INFEREXPERIMENT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SAMTOOLS_INDEX docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RSEQC_BAMSTAT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CUSTOM_TX2GENE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
STAR_GENOMEGENERATE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RSEM_PREPAREREFERENCE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RSEQC_JUNCTIONANNOTATION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
BAM_RSEQC docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RSEQC_INNERDISTANCE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RSEQC_READDUPLICATION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
QUALIMAP_RNASEQ docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
FQ_SUBSAMPLE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SUBREAD_FEATURECOUNTS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SALMON_QUANT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
BAM_MARKDUPLICATES_PICARD docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
FASTQ_ALIGN_HISAT2 docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
STRINGTIE_STRINGTIE docker NF-23.04.0
Process completed with exit code 1.
STRINGTIE_STRINGTIE docker NF-23.04.0
Process completed with exit code 1.
STRINGTIE_STRINGTIE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
MULTIQC docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CAT_FASTQ docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
PICARD_MARKDUPLICATES docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
TXIMETA_TXIMPORT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
UTILS_NFVALIDATION_PLUGIN docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SORTMERNA docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
HISAT2_ALIGN docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
Process completed with exit code 1.
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
Process completed with exit code 1.
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
UTILS_NFCORE_PIPELINE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RSEM_CALCULATEEXPRESSION docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
UTILS_NEXTFLOW_PIPELINE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
Process completed with exit code 1.
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
Process completed with exit code 1.
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
TRIMGALORE docker NF-23.04.0
Process completed with exit code 1.
TRIMGALORE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
TRIMGALORE docker NF-23.04.0
Process completed with exit code 1.
FASTP docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
BAM_STATS_SAMTOOLS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
UMITOOLS_EXTRACT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
UMITOOLS_EXTRACT docker NF-23.04.0
Process completed with exit code 1.
UMITOOLS_EXTRACT docker NF-23.04.0
Process completed with exit code 1.
FASTQC docker NF-23.04.0
Process completed with exit code 1.
FASTQC docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
FASTQC docker NF-23.04.0
Process completed with exit code 1.
SUMMARIZEDEXPERIMENT_SUMMARIZEDEXPERIMENT docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SAMTOOLS_STATS docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
UNTAR docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
STAR_ALIGN docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
PIPELINE docker NF-23.04.0
Process completed with exit code 1.
PIPELINE docker NF-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
PIPELINE docker NF-23.04.0
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
Check for changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
CUSTOM_CATADDITIONALFASTA docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
CUSTOM_CATADDITIONALFASTA docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
KALLISTO_INDEX docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
KALLISTO_INDEX docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
HISAT2_BUILD docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
HISAT2_BUILD docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SAMTOOLS_FLAGSTAT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SAMTOOLS_FLAGSTAT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SALMON_INDEX docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SALMON_INDEX docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
HISAT2_EXTRACTSPLICESITES docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
HISAT2_EXTRACTSPLICESITES docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CUSTOM_GETCHROMSIZES docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
CUSTOM_GETCHROMSIZES docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SAMTOOLS_SORT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SAMTOOLS_SORT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
PRESEQ_LCEXTRAP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
PRESEQ_LCEXTRAP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
GUNZIP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
GUNZIP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
BAM_SORT_STATS_SAMTOOLS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
BAM_SORT_STATS_SAMTOOLS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
KALLISTO_QUANT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
KALLISTO_QUANT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
UCSC_BEDCLIP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
UCSC_BEDCLIP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
GFFREAD docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
GFFREAD docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEQC_TIN docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEQC_TIN docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEQC_JUNCTIONSATURATION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEQC_JUNCTIONSATURATION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
BBMAP_BBSPLIT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
BBMAP_BBSPLIT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SAMTOOLS_IDXSTATS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SAMTOOLS_IDXSTATS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
UCSC_BEDGRAPHTOBIGWIG docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
UCSC_BEDGRAPHTOBIGWIG docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEQC_READDISTRIBUTION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEQC_READDISTRIBUTION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEQC_INFEREXPERIMENT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEQC_INFEREXPERIMENT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SAMTOOLS_INDEX docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SAMTOOLS_INDEX docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEQC_BAMSTAT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEQC_BAMSTAT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CUSTOM_TX2GENE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
CUSTOM_TX2GENE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
STAR_GENOMEGENERATE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
STAR_GENOMEGENERATE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEM_PREPAREREFERENCE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEM_PREPAREREFERENCE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEQC_JUNCTIONANNOTATION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEQC_JUNCTIONANNOTATION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
BAM_RSEQC docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
BAM_RSEQC docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEQC_INNERDISTANCE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEQC_INNERDISTANCE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEQC_READDUPLICATION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEQC_READDUPLICATION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
QUALIMAP_RNASEQ docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
QUALIMAP_RNASEQ docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
FQ_SUBSAMPLE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FQ_SUBSAMPLE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SUBREAD_FEATURECOUNTS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SUBREAD_FEATURECOUNTS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SALMON_QUANT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SALMON_QUANT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
BAM_MARKDUPLICATES_PICARD docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
BAM_MARKDUPLICATES_PICARD docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
FASTQ_ALIGN_HISAT2 docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FASTQ_ALIGN_HISAT2 docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
STRINGTIE_STRINGTIE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
STRINGTIE_STRINGTIE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
MULTIQC docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
MULTIQC docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CAT_FASTQ docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
CAT_FASTQ docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
PICARD_MARKDUPLICATES docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
PICARD_MARKDUPLICATES docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
TXIMETA_TXIMPORT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
TXIMETA_TXIMPORT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
UTILS_NFVALIDATION_PLUGIN docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
UTILS_NFVALIDATION_PLUGIN docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SORTMERNA docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SORTMERNA docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
HISAT2_ALIGN docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
HISAT2_ALIGN docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
UTILS_NFCORE_PIPELINE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
UTILS_NFCORE_PIPELINE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RSEM_CALCULATEEXPRESSION docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
RSEM_CALCULATEEXPRESSION docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
UTILS_NEXTFLOW_PIPELINE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
UTILS_NEXTFLOW_PIPELINE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
TRIMGALORE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
TRIMGALORE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
FASTP docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FASTP docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
BAM_STATS_SAMTOOLS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
BAM_STATS_SAMTOOLS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
UMITOOLS_EXTRACT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
UMITOOLS_EXTRACT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
FASTQC docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FASTQC docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SUMMARIZEDEXPERIMENT_SUMMARIZEDEXPERIMENT docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SUMMARIZEDEXPERIMENT_SUMMARIZEDEXPERIMENT docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SAMTOOLS_STATS docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
SAMTOOLS_STATS docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
UNTAR docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
UNTAR docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
STAR_ALIGN docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
STAR_ALIGN docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
PIPELINE docker NF-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/[email protected], actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
PIPELINE docker NF-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23