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Update bam_markduplicates_picard subworkflow #2469

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Update bam_markduplicates_picard subworkflow

Update bam_markduplicates_picard subworkflow #2469

Run time

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Job Run time
Check for changes
5s
Test HISAT2 with workflow parameters (--skip_qc)
48s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
48s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
46s
Test STAR RSEM with workflow parameters (--skip_qc)
48s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
47s
Test STAR Salmon with workflow parameters (--skip_qc)
47s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
50s
Test STAR Salmon with workflow parameters (--skip_trimming)
46s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
46s
Test STAR Salmon with workflow parameters (--with_umi)
45s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
45s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
48s
Test STAR Salmon with workflow parameters (--bam_csi_index)
47s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
47s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
47s
Test STAR Salmon with workflow parameters (--trimmer fastp)
48s
BAM_MARKDUPLICATES_PICARD docker NF-23.04.0
35s
PICARD_MARKDUPLICATES docker NF-23.04.0
36s
confirm-pass
1s
13m 50s