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Merge pull request #1334 from maxulysse/stubs
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WIP: Adding stubs everywhere
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@maxulysse
maxulysse committed Jul 3, 2024
2 parents b901cbe + ec409aa commit 1af00b9
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -97,6 +97,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
- [PR #1329](https://github.com/nf-core/rnaseq/pull/1329) - Remove tags from all nf-test files
- [PR #1330](https://github.com/nf-core/rnaseq/pull/1330) - Update all nf-core/modules and subworkflows
- [PR #1331](https://github.com/nf-core/rnaseq/pull/1331) - Adding stubs for local modules
- [PR #1334](https://github.com/nf-core/rnaseq/pull/1334) - Update all nf-core/modules and subworkflows with stubs

### Parameters

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32 changes: 16 additions & 16 deletions modules.json
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},
"rsem/calculateexpression": {
"branch": "master",
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},
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},
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"rseqc/tin": {
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"salmon/index": {
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},
"subread/featurecounts": {
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},
"summarizedexperiment/summarizedexperiment": {
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},
"trimgalore": {
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"installed_by": ["fastq_fastqc_umitools_trimgalore"]
},
"tximeta/tximport": {
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},
"ucsc/bedclip": {
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"ucsc/bedgraphtobigwig": {
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},
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},
"umitools/prepareforrsem": {
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},
"fastq_align_hisat2": {
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"installed_by": ["subworkflows"]
},
"fastq_fastqc_umitools_trimgalore": {
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18 changes: 18 additions & 0 deletions modules/nf-core/rsem/calculateexpression/main.nf
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40 changes: 38 additions & 2 deletions modules/nf-core/rsem/calculateexpression/tests/main.nf.test
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159 changes: 159 additions & 0 deletions modules/nf-core/rsem/calculateexpression/tests/main.nf.test.snap
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