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Merge pull request #966 from nf-core/dev
Dev -> Master for 3.11 release
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name: full-sized tests on cloud providers | ||
run-name: Submitting workflow to all cloud providers using full sized data | ||
on: | ||
release: | ||
types: [published] | ||
workflow_dispatch: | ||
inputs: | ||
platform: | ||
description: "Platform to run test" | ||
required: true | ||
default: "all" | ||
type: choice | ||
options: | ||
- all | ||
- aws | ||
- azure | ||
- gcp | ||
jobs: | ||
run-full-tests-on-aws: | ||
if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'aws' }} | ||
runs-on: ubuntu-latest | ||
strategy: | ||
matrix: | ||
aligner: ["star_salmon", "star_rsem"] | ||
steps: | ||
- uses: seqeralabs/action-tower-launch@v1 | ||
with: | ||
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
compute_env: ${{ secrets.TOWER_CE_AWS_CPU }} | ||
workdir: "${{ secrets.TOWER_BUCKET_AWS }}/work/rnaseq/work-${{ github.sha }}" | ||
run_name: "aws_rnaseq_full_${{ matrix.aligner }}" | ||
profiles: test_full_aws | ||
parameters: | | ||
{ | ||
"hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | ||
"outdir": "${{ secrets.TOWER_BUCKET_AWS }}/rnaseq/results-${{ github.sha }}/aligner_${{ matrix.aligner }}" | ||
} | ||
wait: false | ||
- uses: actions/upload-artifact@v3 | ||
with: | ||
name: Tower debug log file | ||
path: tower_action_*.log | ||
run-full-tests-on-gcp: | ||
if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'gcp' }} | ||
runs-on: ubuntu-latest | ||
strategy: | ||
matrix: | ||
aligner: ["star_salmon", "star_rsem"] | ||
steps: | ||
- uses: seqeralabs/action-tower-launch@v1 | ||
with: | ||
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
compute_env: ${{ secrets.TOWER_CE_GCP_CPU }} | ||
workdir: "${{ secrets.TOWER_BUCKET_GCP }}/work/rnaseq/work-${{ github.sha }}" | ||
run_name: "gcp_rnaseq_full_${{ matrix.aligner }}" | ||
profiles: test_full_gcp | ||
parameters: | | ||
{ | ||
"hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | ||
"outdir": "${{ secrets.TOWER_BUCKET_GCP }}/rnaseq/results-${{ github.sha }}/aligner_${{ matrix.aligner }}" | ||
} | ||
wait: false | ||
- uses: actions/upload-artifact@v3 | ||
with: | ||
name: Tower debug log file | ||
path: tower_action_*.log | ||
run-full-tests-on-azure: | ||
if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'azure' }} | ||
runs-on: ubuntu-latest | ||
strategy: | ||
matrix: | ||
aligner: ["star_salmon", "star_rsem"] | ||
steps: | ||
- uses: seqeralabs/action-tower-launch@v1 | ||
with: | ||
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
compute_env: ${{ secrets.TOWER_CE_AZURE_CPU }} | ||
workdir: "${{ secrets.TOWER_BUCKET_AZURE }}/work/rnaseq/work-${{ github.sha }}" | ||
run_name: "azure_rnaseq_full_${{ matrix.aligner }}" | ||
profiles: test_full_azure | ||
parameters: | | ||
{ | ||
"hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | ||
"outdir": "${{ secrets.TOWER_BUCKET_AZURE }}/rnaseq/results-${{ github.sha }}/aligner_${{ matrix.aligner }}", | ||
"igenomes_base": "${{ secrets.TOWER_IGENOMES_BASE_AZURE }}" | ||
} | ||
wait: false | ||
- uses: actions/upload-artifact@v3 | ||
with: | ||
name: Tower debug log file | ||
path: tower_action_*.log |
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