only snapshot versions and assert success

nf-core · Mar 4, 2024 · 941b1e5 · 941b1e5
1 parent fa7d4f4
commit 941b1e5
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Showing 2 changed files with 6 additions and 17 deletions.
diff --git a/tests/main.nf.test b/tests/main.nf.test
@@ -10,27 +10,16 @@ nextflow_pipeline {
         when {
             params {
                 outdir = "$outputDir"
-                input = 'https://raw.githubusercontent.com/nf-core/test-datasets/7f1614baeb0ddf66e60be78c3d9fa55440465ac8/samplesheet/v3.10/samplesheet_test.csv'
+                input  = 'https://raw.githubusercontent.com/nf-core/test-datasets/7f1614baeb0ddf66e60be78c3d9fa55440465ac8/samplesheet/v3.10/samplesheet_test.csv'
             }
         }
 
         then {
+            assert workflow.success
+
             assertAll(
-                { assert workflow.success },
-                { assert new File("$outputDir/bbsplit/").exists() },
-                { assert new File("$outputDir/fastqc/RAP1_IAA_30M_REP1_1_fastqc.html").exists() },
-                { assert new File("$outputDir/fastqc/RAP1_IAA_30M_REP1_2_fastqc.html").exists() },
-                { assert new File("$outputDir/fastqc/RAP1_UNINDUCED_REP1_fastqc.html").exists() },
-                { assert new File("$outputDir/fastqc/RAP1_UNINDUCED_REP2_fastqc.html").exists() },
-                { assert new File("$outputDir/fastqc/WT_REP1_1_fastqc.html").exists() },
-                { assert new File("$outputDir/fastqc/WT_REP1_2_fastqc.html").exists() },
-                { assert new File("$outputDir/fastqc/WT_REP2_1_fastqc.html").exists() },
-                { assert new File("$outputDir/fastqc/WT_REP2_2_fastqc.html").exists() },
-                { assert new File("$outputDir/multiqc/star_salmon/multiqc_report.html").exists() }
-                { assert new File("$outputDir/salmon/").exists() },
-                { assert new File("$outputDir/star_salmon/").exists() },
-                { assert new File("$outputDir/trimgalore/").exists() },
-                { assert snapshot(UTILS.removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml")).match("software_versions") }            )
+                { assert snapshot(UTILS.removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml")).match("software_versions") }
+            )
         }
     }
 }
diff --git a/tests/main.nf.test.snap b/tests/main.nf.test.snap
@@ -9,4 +9,4 @@
         },
         "timestamp": "2024-03-04T12:40:26.161319"
     }
-}
+}