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Issues list

Test and document that Sarek can handle input-samplesheets with mixed samples enhancement New feature or request
#1576 opened Jun 25, 2024 by asp8200
Error while loading shared library for BWA in Sarek pipeline with Singularity bug Something isn't working
#1575 opened Jun 21, 2024 by Simonassaf
5
snpeff capitalization in tower.yml
#1569 opened Jun 18, 2024 by cmatKhan 3.5
1
Sanitize path bug Something isn't working
#1568 opened Jun 18, 2024 by maxulysse 3.5
1
samplesheet issue
#1567 opened Jun 17, 2024 by maxulysse
Suboptimal error msg on missing input bug Something isn't working
#1566 opened Jun 13, 2024 by asp8200
Pooled normals for CNVkit enhancement New feature or request
#1562 opened Jun 12, 2024 by HenriettaHolze
too many genotypes in the combined VCF record bug Something isn't working
#1560 opened Jun 11, 2024 by fan040
Add spring-icon to subway-map enhancement New feature or request
#1558 opened Jun 10, 2024 by asp8200
DRAGMAP_Alignment_error bug Something isn't working
#1555 opened Jun 10, 2024 by poddarharsh15
Re enable all nf-test tests
#1554 opened Jun 10, 2024 by maxulysse
Alignment-only worfklow? enhancement New feature or request
#1551 opened Jun 3, 2024 by lbeltrame
1
single sample haplotypecaller with no dbsnp causes error because of missing dbsnp_tbi bug Something isn't working
#1550 opened Jun 2, 2024 by cmatKhan
Please add VEP plugins (Conservation and Condel) enhancement New feature or request
#1549 opened May 30, 2024 by andrew2k
Remove duplicated config-snippet for SENTIEON_GVCFTYPER bug Something isn't working
#1548 opened May 30, 2024 by asp8200
FILTERMUTECTCALLS is not run for tumor-only samples when there is no germline_resource bug Something isn't working
#1546 opened May 27, 2024 by brandenjlynch
Add more intricate CI tests to verify multiple/single lanes run well
#1544 opened May 27, 2024 by maxulysse
Mapped bam and bai published in different folders bug Something isn't working
#1540 opened May 22, 2024 by asp8200
1
Check if any empty folders are created bug Something isn't working
#1537 opened May 22, 2024 by maxulysse
Nextflow docker: Error response from daemon bug Something isn't working
#1532 opened May 21, 2024 by C2i-PeterChung
1
Different sample name handling causes issues with merging bug Something isn't working
#1528 opened May 16, 2024 by njspix
WES files provided by ascat author bug Something isn't working
#1526 opened May 16, 2024 by wlyucl 3.5
Mutect2 run only on one intervals file bug Something isn't working
#1525 opened May 16, 2024 by ekushele
1
port CREATE_INTERVALS_BED to nf-core/modules enhancement New feature or request
#1523 opened May 15, 2024 by maxulysse
1
Sarek test run unable to find docker image bug Something isn't working
#1519 opened May 10, 2024 by C2i-PeterChung
2
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