Add kraken2 phylogenetic assignment subworkflow #30
Workflow file for this run
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| name: nf-test | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| shard: [1, 2, 3, 4] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up JDK 11 | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: "11" | |
| distribution: "adopt" | |
| - name: Setup Nextflow latest-edge | |
| uses: nf-core/setup-nextflow@v1 | |
| with: | |
| version: "latest-edge" | |
| - name: Install nf-test | |
| run: | | |
| wget -qO- https://get.nf-test.com | bash | |
| sudo mv nf-test /usr/local/bin/ | |
| - name: Run Tests (Shard ${{ matrix.shard }}/${{ strategy.job-total }}) | |
| run: nf-test test --ci --shard ${{ matrix.shard }}/${{ strategy.job-total }} . |