fix: Run every sample and every DB

nf-core · Oct 29, 2024 · 7ebb6c1 · 7ebb6c1
1 parent 4001a50
commit 7ebb6c1
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/modules/nf-core/fastqscreen/fastqscreen/main.nf b/modules/nf-core/fastqscreen/fastqscreen/main.nf
diff --git a/workflows/seqinspector.nf b/workflows/seqinspector.nf
@@ -51,8 +51,7 @@ workflow SEQINSPECTOR {
         .fromList(samplesheetToList(ch_databasesheet, "${projectDir}/assets/schema_database.json"))
 
     FASTQSCREEN_FASTQSCREEN (
-        ch_samplesheet,
-        ch_databases,
+        ch_samplesheet.combine(ch_databases)
     )
     ch_multiqc_files = ch_multiqc_files.mix(FASTQSCREEN_FASTQSCREEN.out.txt)
     ch_versions = ch_versions.mix(FASTQSCREEN_FASTQSCREEN.out.versions.first())