Remove if/else block to include igenomes.config and add igenomes_ignored.config
#1101
Workflow file for this run
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| name: Update CHANGELOG.md | |
| on: | |
| issue_comment: | |
| types: [created] | |
| pull_request_target: | |
| types: [opened] | |
| branches: | |
| - dev | |
| jobs: | |
| update_changelog: | |
| runs-on: ubuntu-latest | |
| # Run if comment is on a PR with the main repo, and if it contains the magic keywords. | |
| # Or run on PR creation, unless asked otherwise in the title. | |
| if: | | |
| github.repository_owner == 'nf-core' && ( | |
| github.event_name == 'pull_request_target' || | |
| github.event.issue.pull_request && startsWith(github.event.comment.body, '@nf-core-bot changelog') | |
| ) | |
| steps: | |
| - uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4 | |
| with: | |
| token: ${{ secrets.NF_CORE_BOT_AUTH_TOKEN }} | |
| # Action runs on the issue comment, so we don't get the PR by default. | |
| # Use the GitHub CLI to check out the PR: | |
| - name: Checkout Pull Request | |
| env: | |
| GH_TOKEN: ${{ secrets.NF_CORE_BOT_AUTH_TOKEN }} | |
| run: | | |
| if [[ "${{ github.event_name }}" == "issue_comment" ]]; then | |
| PR_NUMBER="${{ github.event.issue.number }}" | |
| elif [[ "${{ github.event_name }}" == "pull_request_target" ]]; then | |
| PR_NUMBER="${{ github.event.pull_request.number }}" | |
| fi | |
| gh pr checkout $PR_NUMBER | |
| - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Install packages | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pyyaml | |
| - name: Update CHANGELOG.md from the PR title | |
| env: | |
| COMMENT: ${{ github.event.comment.body }} | |
| GH_TOKEN: ${{ secrets.NF_CORE_BOT_AUTH_TOKEN }} | |
| run: | | |
| if [[ "${{ github.event_name }}" == "issue_comment" ]]; then | |
| export PR_NUMBER='${{ github.event.issue.number }}' | |
| export PR_TITLE='${{ github.event.issue.title }}' | |
| elif [[ "${{ github.event_name }}" == "pull_request_target" ]]; then | |
| export PR_NUMBER='${{ github.event.pull_request.number }}' | |
| export PR_TITLE='${{ github.event.pull_request.title }}' | |
| fi | |
| python ${GITHUB_WORKSPACE}/.github/workflows/changelog.py | |
| - name: Check if CHANGELOG.md actually changed | |
| run: | | |
| git diff --exit-code ${GITHUB_WORKSPACE}/CHANGELOG.md || echo "changed=YES" >> $GITHUB_ENV | |
| echo "File changed: ${{ env.changed }}" | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 | |
| with: | |
| python-version: "3.12" | |
| cache: "pip" | |
| - name: Install pre-commit | |
| run: pip install pre-commit | |
| - name: Run pre-commit checks | |
| if: env.changed == 'YES' | |
| run: | | |
| pre-commit run --all-files | |
| - name: Commit and push changes | |
| if: env.changed == 'YES' | |
| run: | | |
| git config user.email "[email protected]" | |
| git config user.name "nf-core-bot" | |
| git config push.default upstream | |
| git add ${GITHUB_WORKSPACE}/CHANGELOG.md | |
| git status | |
| git commit -m "[automated] Update CHANGELOG.md" | |
| git push |