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xx is present as an output in meta.yml but not in main.nf #3097

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GallVp opened this issue Aug 3, 2024 · 1 comment
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xx is present as an output in meta.yml but not in main.nf #3097

GallVp opened this issue Aug 3, 2024 · 1 comment
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@GallVp
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GallVp commented Aug 3, 2024

Description of feature

For outputs of type tuple val(meta), path("*.variants.tsv"), path("*.depth.tsv"), emit: variants

nf-core modules lint produces a warning:

depths is present as an output in meta.yml but not in main.nf

Should this warning be removed?

@mirpedrol
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Hi @GallVp,
Thank for reporting this, we are planning to fix the structure of all modules meta.yml files so that they contain the correct information (see nf-core/modules#6015), this will be handled by nf-core/tools once the new feature is merged.

@GallVp GallVp closed this as completed Aug 13, 2024
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