Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Module meta.yml restructure #3028

Closed
wants to merge 10 commits into from
Closed

Module meta.yml restructure #3028

wants to merge 10 commits into from
+351 −137

Commits on Jul 5, 2024

  1. 10 minute hack to try to parse proper input structure from module pro… 

    …cesses, for meta.yml
    @ewels @mirpedrol
    ewels authored and mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    17adaca View commit details
    Browse the repository at this point in the history

  2. get correct format of inputs and outputs

    @mirpedrol
    mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    970b4a0 View commit details
    Browse the repository at this point in the history

  3. update module template meta.yml

    @mirpedrol
    mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    744b0fd View commit details
    Browse the repository at this point in the history

  4. add linting for correct inputs and outputs in meta.yml

    @mirpedrol
    mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    c9f6f8f View commit details
    Browse the repository at this point in the history

  5. add update-meta-yml option

    @mirpedrol
    mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    d79f487 View commit details
    Browse the repository at this point in the history

  6. add test for nf-core modules lint --update-meta-yml

    @mirpedrol
    mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    070d792 View commit details
    Browse the repository at this point in the history

  7. remove qualifier

    @mirpedrol
    mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    2b70557 View commit details
    Browse the repository at this point in the history

  8. use param --fix to update the meta.yml

    @mirpedrol
    mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    0f49a88 View commit details
    Browse the repository at this point in the history

  9. create app snapshot from dev branch

    @mirpedrol
    mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    ef7364d View commit details
    Browse the repository at this point in the history

  10. add fix argument

    @mirpedrol
    mirpedrol committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    c7ff082 View commit details
    Browse the repository at this point in the history