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Modules meta.yml ontology #3032

Merged
merged 18 commits into from
Sep 20, 2024
Merged

Modules meta.yml ontology #3032

merged 18 commits into from
Sep 20, 2024

Commits on Jul 5, 2024

  1. 10 minute hack to try to parse proper input structure from module pro… 

    …cesses, for meta.yml
    @ewels @mirpedrol
    ewels authored and mirpedrol committed Jul 5, 2024
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  2. get correct format of inputs and outputs

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  3. update module template meta.yml

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  4. add linting for correct inputs and outputs in meta.yml

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  5. add update-meta-yml option

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  6. add test for nf-core modules lint --update-meta-yml

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  7. remove qualifier

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  8. use param --fix to update the meta.yml

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  9. create app snapshot from dev branch

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  10. add fix argument

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  11. add tool identifier from bio.tools and intput and output ontologies

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  12. fix indentation and run prettier on meta.yml files

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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  13. install correct ruamel library

    @mirpedrol
    mirpedrol committed Jul 5, 2024
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Commits on Sep 17, 2024

  1. Merge branch 'dev' of https://github.com/nf-core/tools into modules-y… 

    …ml-ontology
    @mirpedrol
    mirpedrol committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. fixes for linting modules without an input

    @mirpedrol
    mirpedrol committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. Apply suggestions from code review 

    Co-authored-by: Phil Ewels <[email protected]>
    @mirpedrol @ewels
    mirpedrol and ewels authored Sep 19, 2024
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  2. Merge branch 'dev' into modules-yml-ontology

    @mirpedrol
    mirpedrol authored Sep 19, 2024
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Commits on Sep 20, 2024

  1. Merge branch 'dev' into modules-yml-ontology

    @mirpedrol
    mirpedrol authored Sep 20, 2024
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