update fastp module #1332

Job	Run time
Run pipeline with test data (23.04.0)	3m 48s
Test workflow parameters (--consensus_caller ivar)	3m 44s
Run pipeline with test data (latest-everything)	3m 43s
Test Nanopore workflow (--gff false --freyja_depthcutoff 1)	3m 44s
Test workflow parameters (--variant_caller bcftools --consensus_caller ivar)	3m 43s
Test Nanopore workflow (--additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --fr...	3m 41s
Test workflow parameters (--skip_fastp --skip_pangolin)	3m 44s
Test SISPA workflow (--gff false)	3m 43s
Test workflow parameters (--skip_variants)	3m 43s
Test Nanopore workflow (--input false --freyja_depthcutoff 1)	3m 41s
Test workflow parameters (--skip_cutadapt --skip_snpeff)	3m 45s
Test SISPA workflow (--genome 'NC_045512.2')	3m 41s
Test Nanopore workflow (--min_barcode_reads 10000)	1m 42s
Test workflow parameters (--skip_kraken2)	3m 45s
Test Nanopore workflow (--min_guppyplex_reads 10000)	3m 23s
Test workflow parameters (--skip_assembly)	3m 43s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...	3m 42s
Test workflow parameters (--spades_mode corona)	3m 45s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...	3m 43s
Test workflow parameters (--spades_mode metaviral)	3m 42s
Test workflow parameters (--skip_plasmidid false --skip_asciigenome)	3m 42s
Test workflow parameters (--additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz)	3m 45s
	1h 19m 32s

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