Remove system exit 1 #1234

Job	Run time
Run pipeline with test data (22.10.1)	26m 56s
Run pipeline with test data (latest-everything)	27m 55s
Test workflow parameters (--consensus_caller ivar)	28m 43s
Test workflow parameters (--variant_caller bcftools --consensus_caller ivar)	26m 53s
Test workflow parameters (--skip_fastp --skip_pangolin)	26m 30s
Test workflow parameters (--skip_variants)	15m 44s
Test workflow parameters (--skip_cutadapt --skip_snpeff)	24m 47s
Test workflow parameters (--skip_kraken2)	27m 45s
Test workflow parameters (--skip_assembly)	15m 7s
Test workflow parameters (--spades_mode corona)	22m 23s
Test workflow parameters (--spades_mode metaviral)	23m 51s
Test workflow parameters (--skip_plasmidid false --skip_asciigenome)	25m 52s
Test SISPA workflow (--gff false)	12m 32s
Test SISPA workflow (--genome 'NC_045512.2')	15m 20s
Test Nanopore workflow (--gff false)	20m 18s
Test Nanopore workflow (--input false)	18m 55s
Test Nanopore workflow (--min_barcode_reads 10000)	1m 40s
Test Nanopore workflow (--min_guppyplex_reads 10000)	4m 8s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false)	33m 23s
Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...	30m 35s
	7h 9m 17s

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