Adding new nf-core subworkflow freyja for weighted variant analysis #1236
drpatelhci.yml
on: pull_request
Matrix: Test workflow parameters
Matrix: Run pipeline with test data
Matrix: Test Nanopore workflow
Matrix: Test SISPA workflow
Annotations
20 errors
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Run pipeline with test data (22.10.1)
Canceling since a higher priority waiting request for 'nf-core CI-375' exists
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Test workflow parameters (--consensus_caller ivar)
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Test workflow parameters (--skip_assembly)
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Test workflow parameters (--skip_cutadapt --skip_snpeff)
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Run pipeline with test data (latest-everything)
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Test workflow parameters (--skip_fastp --skip_pangolin)
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Test workflow parameters (--skip_kraken2)
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Test workflow parameters (--skip_variants)
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Test workflow parameters (--spades_mode corona)
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Test workflow parameters (--variant_caller bcftools --consensus_caller ivar)
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Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false)
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Test workflow parameters (--skip_plasmidid false --skip_asciigenome)
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Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...
Canceling since a higher priority waiting request for 'nf-core CI-375' exists
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Test Nanopore workflow (--input false)
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Test Nanopore workflow (--gff false)
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Test Nanopore workflow (--min_barcode_reads 10000)
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Test workflow parameters (--spades_mode metaviral)
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Test Nanopore workflow (--min_guppyplex_reads 10000)
Canceling since a higher priority waiting request for 'nf-core CI-375' exists
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Test SISPA workflow (--genome 'NC_045512.2')
Canceling since a higher priority waiting request for 'nf-core CI-375' exists
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Test SISPA workflow (--gff false)
Canceling since a higher priority waiting request for 'nf-core CI-375' exists
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