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Update README.md
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drpatelh committed Feb 21, 2022
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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -104,7 +104,7 @@ A number of improvements were made to the pipeline recently, mainly with regard
```bash
nextflow run nf-core/viralrecon \
--input samplesheet.csv \
--outdir <OUTDIR>
--outdir <OUTDIR> \
--platform illumina \
--protocol metagenomic \
--genome 'MN908947.3' \
Expand All @@ -116,7 +116,7 @@ A number of improvements were made to the pipeline recently, mainly with regard
```bash
nextflow run nf-core/viralrecon \
--input samplesheet.csv \
--outdir <OUTDIR>
--outdir <OUTDIR> \
--platform illumina \
--protocol amplicon \
--genome 'MN908947.3' \
Expand All @@ -131,7 +131,7 @@ A number of improvements were made to the pipeline recently, mainly with regard
```bash
nextflow run nf-core/viralrecon \
--input samplesheet.csv \
--outdir <OUTDIR>
--outdir <OUTDIR> \
--platform nanopore \
--genome 'MN908947.3' \
--primer_set_version 3 \
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