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Merge pull request #315 from nf-core/dev
Dev -> Master for 2.5 release
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,55 @@ | ||
name: Fix linting from a comment | ||
on: | ||
issue_comment: | ||
types: [created] | ||
|
||
jobs: | ||
deploy: | ||
# Only run if comment is on a PR with the main repo, and if it contains the magic keywords | ||
if: > | ||
contains(github.event.comment.html_url, '/pull/') && | ||
contains(github.event.comment.body, '@nf-core-bot fix linting') && | ||
github.repository == 'nf-core/viralrecon' | ||
runs-on: ubuntu-latest | ||
steps: | ||
# Use the @nf-core-bot token to check out so we can push later | ||
- uses: actions/checkout@v3 | ||
with: | ||
token: ${{ secrets.nf_core_bot_auth_token }} | ||
|
||
# Action runs on the issue comment, so we don't get the PR by default | ||
# Use the gh cli to check out the PR | ||
- name: Checkout Pull Request | ||
run: gh pr checkout ${{ github.event.issue.number }} | ||
env: | ||
GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }} | ||
|
||
- uses: actions/setup-node@v2 | ||
|
||
- name: Install Prettier | ||
run: npm install -g prettier @prettier/plugin-php | ||
|
||
# Check that we actually need to fix something | ||
- name: Run 'prettier --check' | ||
id: prettier_status | ||
run: | | ||
if prettier --check ${GITHUB_WORKSPACE}; then | ||
echo "::set-output name=result::pass" | ||
else | ||
echo "::set-output name=result::fail" | ||
fi | ||
- name: Run 'prettier --write' | ||
if: steps.prettier_status.outputs.result == 'fail' | ||
run: prettier --write ${GITHUB_WORKSPACE} | ||
|
||
- name: Commit & push changes | ||
if: steps.prettier_status.outputs.result == 'fail' | ||
run: | | ||
git config user.email "[email protected]" | ||
git config user.name "nf-core-bot" | ||
git config push.default upstream | ||
git add . | ||
git status | ||
git commit -m "[automated] Fix linting with Prettier" | ||
git push |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,12 +1,10 @@ | ||
repository_type: pipeline | ||
lint: | ||
files_unchanged: | ||
- .markdownlint.yml | ||
- assets/email_template.html | ||
- assets/email_template.txt | ||
- lib/NfcoreTemplate.groovy | ||
- .github/ISSUE_TEMPLATE/bug_report.yml | ||
- .github/PULL_REQUEST_TEMPLATE.md | ||
- .github/workflows/branch.yml | ||
- .github/workflows/linting_comment.yml | ||
- .github/workflows/linting.yml | ||
- lib/NfcoreSchema.groovy | ||
files_exist: | ||
- assets/multiqc_config.yml | ||
- conf/igenomes.config | ||
- lib/WorkflowViralrecon.groovy |
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