-
Notifications
You must be signed in to change notification settings - Fork 107
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #273 from nf-core/dev
Dev -> Master for v2.3 release
- Loading branch information
Showing
254 changed files
with
6,411 additions
and
7,249 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +1,3 @@ | ||
*.config linguist-language=nextflow | ||
modules/nf-core/** linguist-generated | ||
subworkflows/nf-core/** linguist-generated |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,52 @@ | ||
|
||
name: Bug report | ||
description: Report something that is broken or incorrect | ||
labels: bug | ||
body: | ||
|
||
- type: markdown | ||
attributes: | ||
value: | | ||
Before you post this issue, please check the documentation: | ||
- [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) | ||
- [nf-core/viralrecon pipeline documentation](https://nf-co.re/viralrecon/usage) | ||
- type: textarea | ||
id: description | ||
attributes: | ||
label: Description of the bug | ||
description: A clear and concise description of what the bug is. | ||
validations: | ||
required: true | ||
|
||
- type: textarea | ||
id: command_used | ||
attributes: | ||
label: Command used and terminal output | ||
description: Steps to reproduce the behaviour. Please paste the command you used to launch the pipeline and the output from your terminal. | ||
render: console | ||
placeholder: | | ||
$ nextflow run ... | ||
Some output where something broke | ||
- type: textarea | ||
id: files | ||
attributes: | ||
label: Relevant files | ||
description: | | ||
Please drag and drop the relevant files here. Create a `.zip` archive if the extension is not allowed. | ||
Your verbose log file `.nextflow.log` is often useful _(this is a hidden file in the directory where you launched the pipeline)_ as well as custom Nextflow configuration files. | ||
- type: textarea | ||
id: system | ||
attributes: | ||
label: System information | ||
description: | | ||
* Nextflow version _(eg. 21.10.3)_ | ||
* Hardware _(eg. HPC, Desktop, Cloud)_ | ||
* Executor _(eg. slurm, local, awsbatch)_ | ||
* Container engine: _(e.g. Docker, Singularity, Conda, Podman, Shifter or Charliecloud)_ | ||
* OS _(eg. CentOS Linux, macOS, Linux Mint)_ | ||
* Version of nf-core/viralrecon _(eg. 1.1, 1.5, 1.8.2)_ |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,4 +1,3 @@ | ||
blank_issues_enabled: false | ||
contact_links: | ||
- name: Join nf-core | ||
url: https://nf-co.re/join | ||
|
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,11 @@ | ||
name: Feature request | ||
description: Suggest an idea for the nf-core/viralrecon pipeline | ||
labels: enhancement | ||
body: | ||
- type: textarea | ||
id: description | ||
attributes: | ||
label: Description of feature | ||
description: Please describe your suggestion for a new feature. It might help to describe a problem or use case, plus any alternatives that you have considered. | ||
validations: | ||
required: true |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.