[WIP ]update python dependencies

[4141done]

Proposed changes

We have a tricky set of dependencies that were making things hard to manage locally especially for ARM machines.
Normally we'd not update so many dependencies at once, but due to the tangle I'm checking it in provisionally to run the automated checks.

Checklist

Before creating a PR, run through this checklist and mark each as complete.

• I have written my commit messages in the Conventional Commits format.
• I have read the CONTRIBUTING doc
• I have added tests (when possible) that prove my fix is effective or that my feature works
• I have checked that all unit tests pass after adding my changes
• I have updated necessary documentation
• I have rebased my branch onto master
• I will ensure my PR is targeting the master branch and pulling from my branch from my own fork