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[ENH] Adds extraction of physio signals from DICOMs #446

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Commits on May 5, 2020

  1. [ENH] Adds extraction of physio signals from DICOMs

    It uses [`bidsphysio`](https://github.com/cbinyu/bidsphysio) to extract physiological signals from CMRR EPI DICOMs.
    
    It includes regression test
    pvelasco committed May 5, 2020
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Commits on May 6, 2020

  1. Moves the installation of bidsphysio to info.py

    ... from `Dockerfile`
    pvelasco committed May 6, 2020
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  2. Minor formating in heudiconv/convert.py

    Co-authored-by: Mathias Goncalves <[email protected]>
    pvelasco and mgxd authored May 6, 2020
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  3. Minor formating in heudiconv/convert.py

    Co-authored-by: Mathias Goncalves <[email protected]>
    pvelasco and mgxd authored May 6, 2020
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  4. Minor formating in heudiconv/dicoms.py

    Co-authored-by: Mathias Goncalves <[email protected]>
    pvelasco and mgxd authored May 6, 2020
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  5. Minor formatting updates

    pvelasco committed May 6, 2020
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  6. Minor formatting updates

    pvelasco committed May 6, 2020
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  8. RF: convert - convert_physio returns if bids_options is None

    That reduces indentation in the function code.
    pvelasco committed May 6, 2020
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Commits on Jan 6, 2021

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Commits on Jan 7, 2021

  1. Switch back order of seqinfo_fields

    To preserve backwards compatibility
    pvelasco committed Jan 7, 2021
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Commits on Jan 8, 2021

  1. Switch back order of SeqInfo arguments in dicom.py

    To preserve backwards compatibility
    pvelasco committed Jan 8, 2021
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  3. ENH: Allows the user to save the Phoenix Report (Siemens) in the sour…

    …cedata
    
    This way the user can go back to the scanner and import the exact same protocol that was run for a given subject, improving reproducibility.
    pvelasco committed Jan 8, 2021
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  4. Changed calls to bidsphysio to conform with newest version

    [`bidsphysio`](https://github.com/cbinyu/bidsphysio) has been refractored into subpackages so that now we only need to import `bidsphysio.dcm2bids`, which has fewer dependencies
    pvelasco committed Jan 8, 2021
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Commits on Jan 12, 2021

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  2. ENH(minor): sort imports

    yarikoptic committed Jan 12, 2021
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Commits on Jan 19, 2021

  1. Merge pull request #6 from cbinyu/adds_acq_time_to_seqinfo

    Merges `adds_acq_time_to_seqinfo` into `dcm_physio` branch
    pvelasco authored Jan 19, 2021
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  3. Merge pull request #7 from cbinyu/handles_phoenix_file

    Merge `handles_phoenix_file` into `dcm_physio`
    pvelasco authored Jan 19, 2021
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Commits on Jan 21, 2021

  1. Add environment marker (Py>3.5) for dcm2bids requirement.

    The dependencies for `bidsphysio.dcm2bids>=1.4.3` require Python 3.6 or higher, so don't try to install `bidsphysio.dcm2bids` unless `python_version > 3.5`.
    pvelasco committed Jan 21, 2021
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  2. Change name of extra_requires from dcm2bids to physio

    Thanks to @tsalo for his suggestion
    pvelasco committed Jan 21, 2021
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Commits on Jan 22, 2021

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