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[ENH] Adds extraction of physio signals from DICOMs #446
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Commits on May 5, 2020
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[ENH] Adds extraction of physio signals from DICOMs
It uses [`bidsphysio`](https://github.com/cbinyu/bidsphysio) to extract physiological signals from CMRR EPI DICOMs. It includes regression test
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Commits on May 6, 2020
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Moves the installation of
bidsphysio
toinfo.py
... from `Dockerfile`
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Minor formating in heudiconv/convert.py
Co-authored-by: Mathias Goncalves <[email protected]>
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Minor formating in heudiconv/convert.py
Co-authored-by: Mathias Goncalves <[email protected]>
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Minor formating in heudiconv/dicoms.py
Co-authored-by: Mathias Goncalves <[email protected]>
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RF: convert - convert_physio returns if bids_options is None
That reduces indentation in the function code.
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Commits on Jan 6, 2021
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Commits on Jan 7, 2021
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Switch back order of seqinfo_fields
To preserve backwards compatibility
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Commits on Jan 8, 2021
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Switch back order of SeqInfo arguments in dicom.py
To preserve backwards compatibility
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ENH: Allows the user to save the Phoenix Report (Siemens) in the sour…
…cedata This way the user can go back to the scanner and import the exact same protocol that was run for a given subject, improving reproducibility.
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Changed calls to bidsphysio to conform with newest version
[`bidsphysio`](https://github.com/cbinyu/bidsphysio) has been refractored into subpackages so that now we only need to import `bidsphysio.dcm2bids`, which has fewer dependencies
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Commits on Jan 12, 2021
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Commits on Jan 19, 2021
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Merge pull request #6 from cbinyu/adds_acq_time_to_seqinfo
Merges `adds_acq_time_to_seqinfo` into `dcm_physio` branch
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Merge pull request #7 from cbinyu/handles_phoenix_file
Merge `handles_phoenix_file` into `dcm_physio`
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Commits on Jan 21, 2021
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Add environment marker (Py>3.5) for dcm2bids requirement.
The dependencies for `bidsphysio.dcm2bids>=1.4.3` require Python 3.6 or higher, so don't try to install `bidsphysio.dcm2bids` unless `python_version > 3.5`.
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Change name of extra_requires from dcm2bids to physio
Thanks to @tsalo for his suggestion
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Commits on Jan 22, 2021
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