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add more patterns for the annotator #33

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add more patterns for the annotator #33

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8 changes: 5 additions & 3 deletions server/openapi_server/controllers/text_covid_symptom_annotation_controller.py
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Original file line number Diff line number Diff line change
@@ -1,13 +1,15 @@
import connexion

from openapi_server.models.error import Error # noqa: E501
from openapi_server.models.text_covid_symptom_annotation_request import TextCovidSymptomAnnotationRequest # noqa: E501
from openapi_server.models.text_covid_symptom_annotation_response import TextCovidSymptomAnnotationResponse # noqa: E501
from openapi_server.models.text_covid_symptom_annotation import TextCovidSymptomAnnotation # noqa: E501
import re


patterns = {'cough': re.compile("cough"), 'fever': re.compile("fever")}
import re
patterns = dict()
condition_dict = {'abdominal pain':'abdominal_pain','chest pain':'chest_pain','chill':'chill','cough':'cough','cyanosis':'cyanosis','delirium':'delirium','diarrhea':'diarrhea','dyspnea':'dyspnea','fatigue':'fatigue','fever':'fever','headache':'headache','hypersomnia':'hypersomnia','loss of appetite':'loss_of_appetite','loss of smell':'loss_of_smell','loss of taste':'loss_of_taste','myalgia':'myalgia','nasal obstruction':'nasal_obstruction','nausea':'nausea','sore throat':'sore_throat','vomiting':'vomiting', 'shortness of breath':'nasal_obstruction', 'muscle ache':"chill"}
for i in condition_dict.keys():
patterns[condition_dict[i]] = re.compile(i,re.IGNORECASE)


def create_text_covid_symptom_annotations(text_covid_symptom_annotation_request=None): # noqa: E501
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4 changes: 2 additions & 2 deletions server/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
connexion[swagger-ui]==2.7.0
connexion[swagger-ui]==2.11.2
python_dateutil==2.8.1
swagger-ui-bundle==0.0.8
swagger-ui-bundle==0.0.8