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fixing a typo in the minimap module
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nrminor committed Nov 6, 2024
1 parent 943563e commit 4e00c76
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion modules/minimap2.nf
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ process ALIGN_WITH_PRESET {

script:
preset = params.platform == "ont" ? "map-ont" : "sr"
secondary = params.secondary ? "no" : "ues"
secondary = params.secondary ? "no" : "yes"
"""
minimap2 \
--secondary=${secondary} \
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