Bump pypa/cibuildwheel from 2.18.1 to 2.19.1 #32
Workflow file for this run
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: CI | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
steps: | |
- name: Install system build dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y build-essential make zlib1g-dev libssl-dev libpng-dev | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Build UCSC kent library | |
run: | | |
make build-ucsc | |
- name: Install Python dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install pytest | |
python -m pip install cython numpy pandas | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
- name: Build and install package | |
run: | | |
DISTUTILS_DEBUG=1 python -m pip install -v -e . | |
ldd -r bbi/cbbi*.so | |
- name: Test with pytest | |
run: | | |
pytest -v |