Merge pull request #276 from obophenotype/sparql-for-manuscript

added some sparql queries
obophenotype · Mar 21, 2022 · 4fde5b6 · 4fde5b6
2 parents 1a6b0a7 + 58e8fd2
commit 4fde5b6
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diff --git a/src/sparql/pcl-celltypes-count.sparql b/src/sparql/pcl-celltypes-count.sparql
@@ -0,0 +1,10 @@
+PREFIX owl: <http://www.w3.org/2002/07/owl#>
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX CL: <http://purl.obolibrary.org/obo/CL_>
+
+SELECT (COUNT (DISTINCT ?term) as ?pclcells)
+WHERE {
+  	?term a owl:Class . 
+  	?term rdfs:subClassOf* CL:0000003
+  FILTER(isIRI(?term) && (STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/PCL_")))
+}
diff --git a/src/sparql/pcl_cluster.sparql b/src/sparql/pcl_cluster.sparql
@@ -0,0 +1,9 @@
+PREFIX owl: <http://www.w3.org/2002/07/owl#>
+PREFIX pcl: <http://purl.obolibrary.org/obo/PCL_>
+
+SELECT (COUNT (DISTINCT ?ind) as ?indcount)
+WHERE {
+    ?ind a owl:NamedIndividual ;
+    pcl:0010059 ?cluster.
+  FILTER(isIRI(?ind) && (STRSTARTS(str(?ind), "http://purl.obolibrary.org/obo/PCL_")))
+}
diff --git a/src/sparql/pcl_individual.sparql b/src/sparql/pcl_individual.sparql
@@ -0,0 +1,10 @@
+PREFIX owl: <http://www.w3.org/2002/07/owl#>
+
+SELECT (COUNT (DISTINCT ?ind) as ?indcount)
+WHERE {
+    ?ind a owl:NamedIndividual .
+    { ?s3 ?p3 ?ind. }
+    UNION
+    { ?ind ?p4 ?o4 . }
+  FILTER(isIRI(?ind) && (STRSTARTS(str(?ind), "http://purl.obolibrary.org/obo/PCL_")))
+}