updated navbar with color and logo

.github/workflows/build_and_test.yml

@@ -18,7 +18,7 @@ jobs:
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.10.12"
+          python-version: "3.11.5"
 
       - name: Install pipenv and dependencies
         run: |

Pipfile

@@ -11,4 +11,3 @@ sphinxcontrib-email = "*"
 pydata-sphinx-theme = "*"
 make = "*"
 ipython = "==8.10.0" # this version is required to avoid the "WARNING: Pygments lexer name 'ipython3' is not known" that occurs when trying to use notebooks in sphinx - maybe this will be updated
-sphinx-autobuild = "*"

source/_static/theme_overrides.css

@@ -108,13 +108,13 @@ h6 {
 
 /* navigation bar colors*/
 .navbar {
-  background: white !important;
+  background: #cd98c2ff !important;
   font-size: 1em;
 }
 
 .navbar-nav>.active>.nav-link {
-  background-color: white !important;
-  color: #344b39 !important;
+  background-color: #e6eddf !important;
+  color: #2f401f !important;
   font-weight: normal !important;
   transition-duration: 0.4s;
 }
@@ -125,20 +125,20 @@ h6 {
 }
 
 .navbar a {
-  color: grey !important;
+  color: white !important;
   font-family: "Bitter", sans-serif;
   transition-duration: 0.4s;
   margin-right: 10px;
 }
 
 .search-button {
-  color: grey !important;
+  color: white !important;
   margin-right: 30px;
 }
 
 
 .navbar a:hover {
-  color: grey !important;
+  color: #2f401f !important;
   transition-duration: 0.4s;
 }
 

source/conf.py

@@ -86,7 +86,7 @@
 # a list of builtin themes.
 #
 html_theme = "pydata_sphinx_theme"
-html_logo = "_static/images/miniscope-logo.png"
+html_logo = "_static/images/oe_logo_name.svg"
 html_scaled_image_link = True
 html_title = project
 

source/ucla-miniscope-v4/developer/mods/spectral.rst

@@ -10,7 +10,7 @@ The UCLA Miniscope v4 as sold by Open Ephys is compatible with green indicators
 Standard
 ********
 
-470nm (blue) LED excitation light source (`LXZ1-PB01 <https://octopart.com/datasheet/lxz1-px01-lumileds-31228818>`__) to image a green indicator e.g. `GCaMP6f <https://www.fpbase.org/protein/gcamp6f/>`__: 
+470nm (blue) LED excitation light source (`LXZ1-PB01 <https://luxeonstar.com/wp-content/uploads/documentation/ds105.pdf>`__) to image a green indicator e.g. `GCaMP6f <https://www.fpbase.org/protein/gcamp6f/>`__: 
 
 .. figure:: /_static/images/gcamp6f.svg
     :alt:   plot of emission/excitation spectra of GCaMP6f
@@ -38,7 +38,7 @@ The standard UCLA Miniscope v4 is sold by Open Ephys in DIY kits and already ass
 Lime
 ****
 
-560nm (yellow-green) LED excitation light source (`LXZ1-PX01 <https://octopart.com/datasheet/lxz1-px01-lumileds-31228818>`__) to image a red indicator e.g. `jRGECO1a <https://www.fpbase.org/protein/jrgeco1a/>`__:
+560nm (yellow-green) LED excitation light source (`LXZ1-PX01 <https://luxeonstar.com/wp-content/uploads/documentation/ds105.pdf>`__) to image a red indicator e.g. `jRGECO1a <https://www.fpbase.org/protein/jrgeco1a/>`__:
 
 .. figure:: /_static/images/jrgeco1a.svg
     :alt:   plot of emission/excitation spectra of jRGECO1a