Workaround for independent writes to Iterations in parallel, better detection of BP5 which in turn uncovers more instances of the first issue #3282
Workflow file for this run
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| name: 🍏 macOS | |
| on: [push, pull_request] | |
| concurrency: | |
| group: ${{ github.ref }}-${{ github.head_ref }}-macos | |
| cancel-in-progress: true | |
| jobs: | |
| # TODO: (old Travis-CI coverage) | |
| # appleclang9_py37_nompi_h5 | |
| # appleclang10_py37_h5_ad2_libcpp | |
| # appleclang11_nopy_nompi_h5_ad2 | |
| appleclang14_py_mpi_h5_ad2: | |
| runs-on: macos-latest | |
| if: github.event.pull_request.draft == false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install | |
| run: | | |
| rm -rf /usr/local/bin/2to3 | |
| set +e | |
| brew update | |
| brew install adios2 || true | |
| brew install hdf5-mpi || true | |
| brew install python || true | |
| python3 -m pip install -U mpi4py numpy pandas | |
| set -e | |
| - name: Build | |
| env: {CXXFLAGS: -Werror, MACOSX_DEPLOYMENT_TARGET: 11.0} | |
| # 10.14+ due to std::visit | |
| # 10.15+ due to std::filesystem in toml11 | |
| # https://cibuildwheel.readthedocs.io/en/stable/cpp_standards/#macos-and-deployment-target-versions | |
| # 11.0+ for arm64/aarch64 (M1/M2) builds | |
| run: | | |
| share/openPMD/download_samples.sh build | |
| cmake -S . -B build \ | |
| -DopenPMD_USE_PYTHON=ON \ | |
| -DopenPMD_USE_MPI=ON \ | |
| -DopenPMD_USE_HDF5=ON \ | |
| -DopenPMD_USE_ADIOS2=ON \ | |
| -DopenPMD_USE_INVASIVE_TESTS=ON \ | |
| -DMPIEXEC_EXECUTABLE=".github/workflows/mpirun_workaround.sh" | |
| cmake --build build --parallel 3 | |
| ctest --test-dir build --verbose | |
| appleclang13_py: | |
| runs-on: macos-11 | |
| if: github.event.pull_request.draft == false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install | |
| env: {MACOSX_DEPLOYMENT_TARGET: 11.0} | |
| run: | | |
| set +e | |
| python3 -m pip install -U numpy pandas | |
| set -e | |
| - name: Build | |
| env: {CXXFLAGS: -Werror, MACOSX_DEPLOYMENT_TARGET: 11.0} | |
| # 10.14+ due to std::visit | |
| # 10.15+ due to std::filesystem in toml11 | |
| # https://cibuildwheel.readthedocs.io/en/stable/cpp_standards/#macos-and-deployment-target-versions | |
| # 11.0+ for arm64/aarch64 (M1/M2) builds | |
| run: | | |
| share/openPMD/download_samples.sh build | |
| cmake -S . -B build \ | |
| -DopenPMD_USE_PYTHON=ON \ | |
| -DopenPMD_USE_MPI=OFF \ | |
| -DopenPMD_USE_HDF5=OFF \ | |
| -DopenPMD_USE_ADIOS2=OFF \ | |
| -DopenPMD_USE_INVASIVE_TESTS=ON \ | |
| -DPython_EXECUTABLE=$(which python3) | |
| cmake --build build --parallel 3 | |
| ctest --test-dir build --verbose | |
| rm -rf build/samples | |
| share/openPMD/download_samples.sh build | |
| OPENPMD2_ADIOS2_USE_GROUP_TABLE=1 ctest --test-dir build --verbose | |
| # TODO: apple_conda_ompi_all (similar to conda_ompi_all on Linux) | |
| # both OpenMPI and MPICH cause startup (MPI_Init) issues on GitHub Actions |