-
Notifications
You must be signed in to change notification settings - Fork 51
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Add Python example for custom hierarchies
- Loading branch information
1 parent
74f642c
commit ced895b
Showing
1 changed file
with
45 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,45 @@ | ||
import numpy as np | ||
import openpmd_api as io | ||
|
||
|
||
def main(): | ||
s = io.Series("../samples/custom_hierarchy.bp", io.Access.create) | ||
it = s.write_iterations()[100] | ||
|
||
# write openPMD part | ||
temp = it.meshes["temperature"] | ||
temp.axis_labels = ["x", "y"] | ||
temp.unit_dimension = {io.Unit_Dimension.T: 1} | ||
temp.position = [0.5, 0.5] | ||
temp.grid_spacing = [1, 1] | ||
temp.grid_global_offset = [0, 0] | ||
temp.reset_dataset(io.Dataset(np.dtype("double"), [5, 5])) | ||
temp[()] = np.zeros((5, 5)) | ||
|
||
# write NeXus part | ||
nxentry = it["Scan:NXentry"] | ||
nxentry.set_attribute("NX_class", "NXentry") | ||
nxentry.set_attribute("default", "data") | ||
|
||
data = nxentry["data:Nxdata"] | ||
data.set_attribute("NX_class", "NXdata") | ||
data.set_attribute("signal", "counts") | ||
data.set_attribute("axes", ["two_theta"]) | ||
data.set_attribute("two_theta_indices", [0]) | ||
|
||
counts = data.datasets()["counts"] | ||
counts.set_attribute("units", "counts") | ||
counts.set_attribute("long_name", "photodiode counts") | ||
counts.reset_dataset(io.Dataset(np.dtype("int"), [15])) | ||
counts[()] = np.zeros(15, dtype=np.dtype("int")) | ||
|
||
two_theta = data.datasets()["two_theta"] | ||
two_theta.set_attribute("units", "degrees") | ||
two_theta.set_attribute("long_name", "two_theta (degrees)") | ||
two_theta.reset_dataset(io.Dataset(np.dtype("double"), [15])) | ||
two_theta[()] = np.zeros(15) | ||
|
||
|
||
|
||
if __name__ == "__main__": | ||
main() |