Update Pybind to 2.11.1

share/openPMD/thirdParty/pybind11/CMakeLists.txt

@@ -5,15 +5,15 @@
 # All rights reserved. Use of this source code is governed by a
 # BSD-style license that can be found in the LICENSE file.
 
-cmake_minimum_required(VERSION 3.4)
+cmake_minimum_required(VERSION 3.5)
 
-# The `cmake_minimum_required(VERSION 3.4...3.22)` syntax does not work with
+# The `cmake_minimum_required(VERSION 3.5...3.26)` syntax does not work with
 # some versions of VS that have a patched CMake 3.11. This forces us to emulate
 # the behavior using the following workaround:
-if(${CMAKE_VERSION} VERSION_LESS 3.22)
+if(${CMAKE_VERSION} VERSION_LESS 3.26)
   cmake_policy(VERSION ${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION})
 else()
-  cmake_policy(VERSION 3.22)
+  cmake_policy(VERSION 3.26)
 endif()
 
 # Avoid infinite recursion if tests include this as a subdirectory
@@ -126,6 +126,9 @@ set(PYBIND11_HEADERS
     include/pybind11/complex.h
     include/pybind11/options.h
     include/pybind11/eigen.h
+    include/pybind11/eigen/common.h
+    include/pybind11/eigen/matrix.h
+    include/pybind11/eigen/tensor.h
     include/pybind11/embed.h
     include/pybind11/eval.h
     include/pybind11/gil.h
@@ -137,7 +140,8 @@ set(PYBIND11_HEADERS
     include/pybind11/pytypes.h
     include/pybind11/stl.h
     include/pybind11/stl_bind.h
-    include/pybind11/stl/filesystem.h)
+    include/pybind11/stl/filesystem.h
+    include/pybind11/type_caster_pyobject_ptr.h)
 
 # Compare with grep and warn if mismatched
 if(PYBIND11_MASTER_PROJECT AND NOT CMAKE_VERSION VERSION_LESS 3.12)

share/openPMD/thirdParty/pybind11/MANIFEST.in

@@ -1,5 +1,6 @@
+prune tests
 recursive-include pybind11/include/pybind11 *.h
 recursive-include pybind11 *.py
 recursive-include pybind11 py.typed
 include pybind11/share/cmake/pybind11/*.cmake
-include LICENSE README.rst pyproject.toml setup.py setup.cfg
+include LICENSE README.rst SECURITY.md pyproject.toml setup.py setup.cfg

share/openPMD/thirdParty/pybind11/README.rst

@@ -135,7 +135,7 @@ This project was created by `Wenzel
 Jakob <http://rgl.epfl.ch/people/wjakob>`_. Significant features and/or
 improvements to the code were contributed by Jonas Adler, Lori A. Burns,
 Sylvain Corlay, Eric Cousineau, Aaron Gokaslan, Ralf Grosse-Kunstleve, Trent Houliston, Axel
-Huebl, @hulucc, Yannick Jadoul, Sergey Lyskov Johan Mabille, Tomasz Miąsko,
+Huebl, @hulucc, Yannick Jadoul, Sergey Lyskov, Johan Mabille, Tomasz Miąsko,
 Dean Moldovan, Ben Pritchard, Jason Rhinelander, Boris Schäling, Pim
 Schellart, Henry Schreiner, Ivan Smirnov, Boris Staletic, and Patrick Stewart.
 

share/openPMD/thirdParty/pybind11/include/pybind11/attr.h

@@ -26,6 +26,9 @@ struct is_method {
     explicit is_method(const handle &c) : class_(c) {}
 };
 
+/// Annotation for setters
+struct is_setter {};
+
 /// Annotation for operators
 struct is_operator {};
 
@@ -188,8 +191,8 @@ struct argument_record {
 struct function_record {
     function_record()
         : is_constructor(false), is_new_style_constructor(false), is_stateless(false),
-          is_operator(false), is_method(false), has_args(false), has_kwargs(false),
-          prepend(false) {}
+          is_operator(false), is_method(false), is_setter(false), has_args(false),
+          has_kwargs(false), prepend(false) {}
 
     /// Function name
     char *name = nullptr; /* why no C++ strings? They generate heavier code.. */
@@ -230,6 +233,9 @@ struct function_record {
     /// True if this is a method
     bool is_method : 1;
 
+    /// True if this is a setter
+    bool is_setter : 1;
+
     /// True if the function has a '*args' argument
     bool has_args : 1;
 
@@ -399,7 +405,7 @@ struct process_attribute<doc> : process_attribute_default<doc> {
 template <>
 struct process_attribute<const char *> : process_attribute_default<const char *> {
     static void init(const char *d, function_record *r) { r->doc = const_cast<char *>(d); }
-    static void init(const char *d, type_record *r) { r->doc = const_cast<char *>(d); }
+    static void init(const char *d, type_record *r) { r->doc = d; }
 };
 template <>
 struct process_attribute<char *> : process_attribute<const char *> {};
@@ -426,6 +432,12 @@ struct process_attribute<is_method> : process_attribute_default<is_method> {
     }
 };
 
+/// Process an attribute which indicates that this function is a setter
+template <>
+struct process_attribute<is_setter> : process_attribute_default<is_setter> {
+    static void init(const is_setter &, function_record *r) { r->is_setter = true; }
+};
+
 /// Process an attribute which indicates the parent scope of a method
 template <>
 struct process_attribute<scope> : process_attribute_default<scope> {

share/openPMD/thirdParty/pybind11/include/pybind11/buffer_info.h

@@ -37,6 +37,9 @@ inline std::vector<ssize_t> f_strides(const std::vector<ssize_t> &shape, ssize_t
     return strides;
 }
 
+template <typename T, typename SFINAE = void>
+struct compare_buffer_info;
+
 PYBIND11_NAMESPACE_END(detail)
 
 /// Information record describing a Python buffer object
@@ -150,6 +153,17 @@ struct buffer_info {
     Py_buffer *view() const { return m_view; }
     Py_buffer *&view() { return m_view; }
 
+    /* True if the buffer item type is equivalent to `T`. */
+    // To define "equivalent" by example:
+    // `buffer_info::item_type_is_equivalent_to<int>(b)` and
+    // `buffer_info::item_type_is_equivalent_to<long>(b)` may both be true
+    // on some platforms, but `int` and `unsigned` will never be equivalent.
+    // For the ground truth, please inspect `detail::compare_buffer_info<>`.
+    template <typename T>
+    bool item_type_is_equivalent_to() const {
+        return detail::compare_buffer_info<T>::compare(*this);
+    }
+
 private:
     struct private_ctr_tag {};
 
@@ -170,9 +184,10 @@ struct buffer_info {
 
 PYBIND11_NAMESPACE_BEGIN(detail)
 
-template <typename T, typename SFINAE = void>
+template <typename T, typename SFINAE>
 struct compare_buffer_info {
     static bool compare(const buffer_info &b) {
+        // NOLINTNEXTLINE(bugprone-sizeof-expression) Needed for `PyObject *`
         return b.format == format_descriptor<T>::format() && b.itemsize == (ssize_t) sizeof(T);
     }
 };

share/openPMD/thirdParty/pybind11/include/pybind11/cast.h

@@ -29,6 +29,9 @@
 #include <vector>
 
 PYBIND11_NAMESPACE_BEGIN(PYBIND11_NAMESPACE)
+
+PYBIND11_WARNING_DISABLE_MSVC(4127)
+
 PYBIND11_NAMESPACE_BEGIN(detail)
 
 template <typename type, typename SFINAE = void>
@@ -88,7 +91,8 @@ public:
     template <typename T_,                                                                        \
               ::pybind11::detail::enable_if_t<                                                    \
                   std::is_same<type, ::pybind11::detail::remove_cv_t<T_>>::value,                 \
-                  int> = 0>                                                                       \
+                  int>                                                                            \
+              = 0>                                                                                \
     static ::pybind11::handle cast(                                                               \
         T_ *src, ::pybind11::return_value_policy policy, ::pybind11::handle parent) {             \
         if (!src)                                                                                 \
@@ -389,7 +393,7 @@ struct string_caster {
 
         // For UTF-8 we avoid the need for a temporary `bytes` object by using
         // `PyUnicode_AsUTF8AndSize`.
-        if (PYBIND11_SILENCE_MSVC_C4127(UTF_N == 8)) {
+        if (UTF_N == 8) {
             Py_ssize_t size = -1;
             const auto *buffer
                 = reinterpret_cast<const CharT *>(PyUnicode_AsUTF8AndSize(load_src.ptr(), &size));
@@ -416,7 +420,7 @@ struct string_caster {
             = reinterpret_cast<const CharT *>(PYBIND11_BYTES_AS_STRING(utfNbytes.ptr()));
         size_t length = (size_t) PYBIND11_BYTES_SIZE(utfNbytes.ptr()) / sizeof(CharT);
         // Skip BOM for UTF-16/32
-        if (PYBIND11_SILENCE_MSVC_C4127(UTF_N > 8)) {
+        if (UTF_N > 8) {
             buffer++;
             length--;
         }
@@ -572,7 +576,7 @@ struct type_caster<CharT, enable_if_t<is_std_char_type<CharT>::value>> {
         // figure out how long the first encoded character is in bytes to distinguish between these
         // two errors.  We also allow want to allow unicode characters U+0080 through U+00FF, as
         // those can fit into a single char value.
-        if (PYBIND11_SILENCE_MSVC_C4127(StringCaster::UTF_N == 8) && str_len > 1 && str_len <= 4) {
+        if (StringCaster::UTF_N == 8 && str_len > 1 && str_len <= 4) {
             auto v0 = static_cast<unsigned char>(value[0]);
             // low bits only: 0-127
             // 0b110xxxxx - start of 2-byte sequence
@@ -598,7 +602,7 @@ struct type_caster<CharT, enable_if_t<is_std_char_type<CharT>::value>> {
         // UTF-16 is much easier: we can only have a surrogate pair for values above U+FFFF, thus a
         // surrogate pair with total length 2 instantly indicates a range error (but not a "your
         // string was too long" error).
-        else if (PYBIND11_SILENCE_MSVC_C4127(StringCaster::UTF_N == 16) && str_len == 2) {
+        else if (StringCaster::UTF_N == 16 && str_len == 2) {
             one_char = static_cast<CharT>(value[0]);
             if (one_char >= 0xD800 && one_char < 0xE000) {
                 throw value_error("Character code point not in range(0x10000)");
@@ -960,7 +964,7 @@ struct move_always<
     enable_if_t<
         all_of<move_is_plain_type<T>,
                negation<is_copy_constructible<T>>,
-               std::is_move_constructible<T>,
+               is_move_constructible<T>,
                std::is_same<decltype(std::declval<make_caster<T>>().operator T &()), T &>>::value>>
     : std::true_type {};
 template <typename T, typename SFINAE = void>
@@ -971,7 +975,7 @@ struct move_if_unreferenced<
     enable_if_t<
         all_of<move_is_plain_type<T>,
                negation<move_always<T>>,
-               std::is_move_constructible<T>,
+               is_move_constructible<T>,
                std::is_same<decltype(std::declval<make_caster<T>>().operator T &()), T &>>::value>>
     : std::true_type {};
 template <typename T>
@@ -1013,11 +1017,14 @@ type_caster<T, SFINAE> &load_type(type_caster<T, SFINAE> &conv, const handle &ha
                   "Internal error: type_caster should only be used for C++ types");
     if (!conv.load(handle, true)) {
 #if !defined(PYBIND11_DETAILED_ERROR_MESSAGES)
-        throw cast_error("Unable to cast Python instance to C++ type (#define "
-                         "PYBIND11_DETAILED_ERROR_MESSAGES or compile in debug mode for details)");
+        throw cast_error(
+            "Unable to cast Python instance of type "
+            + str(type::handle_of(handle)).cast<std::string>()
+            + " to C++ type '?' (#define "
+              "PYBIND11_DETAILED_ERROR_MESSAGES or compile in debug mode for details)");
 #else
         throw cast_error("Unable to cast Python instance of type "
-                         + (std::string) str(type::handle_of(handle)) + " to C++ type '"
+                         + str(type::handle_of(handle)).cast<std::string>() + " to C++ type '"
                          + type_id<T>() + "'");
 #endif
     }
@@ -1034,7 +1041,11 @@ make_caster<T> load_type(const handle &handle) {
 PYBIND11_NAMESPACE_END(detail)
 
 // pytype -> C++ type
-template <typename T, detail::enable_if_t<!detail::is_pyobject<T>::value, int> = 0>
+template <typename T,
+          detail::enable_if_t<!detail::is_pyobject<T>::value
+                                  && !detail::is_same_ignoring_cvref<T, PyObject *>::value,
+                              int>
+          = 0>
 T cast(const handle &handle) {
     using namespace detail;
     static_assert(!cast_is_temporary_value_reference<T>::value,
@@ -1048,6 +1059,34 @@ T cast(const handle &handle) {
     return T(reinterpret_borrow<object>(handle));
 }
 
+// Note that `cast<PyObject *>(obj)` increments the reference count of `obj`.
+// This is necessary for the case that `obj` is a temporary, and could
+// not possibly be different, given
+// 1. the established convention that the passed `handle` is borrowed, and
+// 2. we don't want to force all generic code using `cast<T>()` to special-case
+//    handling of `T` = `PyObject *` (to increment the reference count there).
+// It is the responsibility of the caller to ensure that the reference count
+// is decremented.
+template <typename T,
+          typename Handle,
+          detail::enable_if_t<detail::is_same_ignoring_cvref<T, PyObject *>::value
+                                  && detail::is_same_ignoring_cvref<Handle, handle>::value,
+                              int>
+          = 0>
+T cast(Handle &&handle) {
+    return handle.inc_ref().ptr();
+}
+// To optimize way an inc_ref/dec_ref cycle:
+template <typename T,
+          typename Object,
+          detail::enable_if_t<detail::is_same_ignoring_cvref<T, PyObject *>::value
+                                  && detail::is_same_ignoring_cvref<Object, object>::value,
+                              int>
+          = 0>
+T cast(Object &&obj) {
+    return obj.release().ptr();
+}
+
 // C++ type -> py::object
 template <typename T, detail::enable_if_t<!detail::is_pyobject<T>::value, int> = 0>
 object cast(T &&value,
@@ -1081,12 +1120,13 @@ detail::enable_if_t<!detail::move_never<T>::value, T> move(object &&obj) {
     if (obj.ref_count() > 1) {
 #if !defined(PYBIND11_DETAILED_ERROR_MESSAGES)
         throw cast_error(
-            "Unable to cast Python instance to C++ rvalue: instance has multiple references"
-            " (#define PYBIND11_DETAILED_ERROR_MESSAGES or compile in debug mode for details)");
+            "Unable to cast Python " + str(type::handle_of(obj)).cast<std::string>()
+            + " instance to C++ rvalue: instance has multiple references"
+              " (#define PYBIND11_DETAILED_ERROR_MESSAGES or compile in debug mode for details)");
 #else
-        throw cast_error("Unable to move from Python " + (std::string) str(type::handle_of(obj))
-                         + " instance to C++ " + type_id<T>()
-                         + " instance: instance has multiple references");
+        throw cast_error("Unable to move from Python "
+                         + str(type::handle_of(obj)).cast<std::string>() + " instance to C++ "
+                         + type_id<T>() + " instance: instance has multiple references");
 #endif
     }
 
@@ -1191,9 +1231,10 @@ PYBIND11_NAMESPACE_END(detail)
 // The overloads could coexist, i.e. the #if is not strictly speaking needed,
 // but it is an easy minor optimization.
 #if !defined(PYBIND11_DETAILED_ERROR_MESSAGES)
-inline cast_error cast_error_unable_to_convert_call_arg() {
-    return cast_error("Unable to convert call argument to Python object (#define "
-                      "PYBIND11_DETAILED_ERROR_MESSAGES or compile in debug mode for details)");
+inline cast_error cast_error_unable_to_convert_call_arg(const std::string &name) {
+    return cast_error("Unable to convert call argument '" + name
+                      + "' to Python object (#define "
+                        "PYBIND11_DETAILED_ERROR_MESSAGES or compile in debug mode for details)");
 }
 #else
 inline cast_error cast_error_unable_to_convert_call_arg(const std::string &name,
@@ -1216,7 +1257,7 @@ tuple make_tuple(Args &&...args_) {
     for (size_t i = 0; i < args.size(); i++) {
         if (!args[i]) {
 #if !defined(PYBIND11_DETAILED_ERROR_MESSAGES)
-            throw cast_error_unable_to_convert_call_arg();
+            throw cast_error_unable_to_convert_call_arg(std::to_string(i));
 #else
             std::array<std::string, size> argtypes{{type_id<Args>()...}};
             throw cast_error_unable_to_convert_call_arg(std::to_string(i), argtypes[i]);
@@ -1506,7 +1547,7 @@ class unpacking_collector {
             detail::make_caster<T>::cast(std::forward<T>(x), policy, {}));
         if (!o) {
 #if !defined(PYBIND11_DETAILED_ERROR_MESSAGES)
-            throw cast_error_unable_to_convert_call_arg();
+            throw cast_error_unable_to_convert_call_arg(std::to_string(args_list.size()));
 #else
             throw cast_error_unable_to_convert_call_arg(std::to_string(args_list.size()),
                                                         type_id<T>());
@@ -1538,7 +1579,7 @@ class unpacking_collector {
         }
         if (!a.value) {
 #if !defined(PYBIND11_DETAILED_ERROR_MESSAGES)
-            throw cast_error_unable_to_convert_call_arg();
+            throw cast_error_unable_to_convert_call_arg(a.name);
 #else
             throw cast_error_unable_to_convert_call_arg(a.name, a.type);
 #endif

share/openPMD/thirdParty/pybind11/include/pybind11/detail/class.h

@@ -445,9 +445,17 @@ inline void clear_instance(PyObject *self) {
 /// Instance destructor function for all pybind11 types. It calls `type_info.dealloc`
 /// to destroy the C++ object itself, while the rest is Python bookkeeping.
 extern "C" inline void pybind11_object_dealloc(PyObject *self) {
+    auto *type = Py_TYPE(self);
+
+    // If this is a GC tracked object, untrack it first
+    // Note that the track call is implicitly done by the
+    // default tp_alloc, which we never override.
+    if (PyType_HasFeature(type, Py_TPFLAGS_HAVE_GC) != 0) {
+        PyObject_GC_UnTrack(self);
+    }
+
     clear_instance(self);
 
-    auto *type = Py_TYPE(self);
     type->tp_free(self);
 
 #if PY_VERSION_HEX < 0x03080000