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Julia bindings #1025

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Commits on Jun 27, 2021

  1. Partial Julia bindings

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    eschnett committed Jun 27, 2021
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  2. Julia: Wrap store_chunk

    @eschnett
    eschnett committed Jun 27, 2021
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Commits on Jun 28, 2021

  1. Move Julia package to a separate repository

    @eschnett
    eschnett committed Jun 28, 2021
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  2. Require C++17 for Julia wrappers

    @eschnett
    eschnett committed Jun 28, 2021
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  3. Julia: Only require C++14

    @eschnett
    eschnett committed Jun 28, 2021
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  4. Julia: Switch back to C++17

    @eschnett
    eschnett committed Jun 28, 2021
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  5. Disable std::variant on Apple with clang

    @eschnett
    eschnett committed Jun 28, 2021
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  6. cmake: Only look for C++ MPI

    @eschnett
    eschnett committed Jun 28, 2021
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Commits on Jun 29, 2021

  1. Install Julia bindings

    @eschnett
    eschnett committed Jun 29, 2021
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Commits on Jul 3, 2021

  1. Rename to WriteIterations::getindex

    @eschnett
    eschnett committed Jul 3, 2021
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Commits on Jul 4, 2021

  1. Rename to MeshRecordComponent1

    @eschnett
    eschnett committed Jul 4, 2021
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  2. Simplify function names

    @eschnett
    eschnett committed Jul 4, 2021
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Commits on Jul 5, 2021

  1. Use separate function names for templates

    @eschnett
    eschnett committed Jul 5, 2021
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Commits on Jul 7, 2021

  1. New API for loadChunk

    @eschnett
    eschnett committed Jul 7, 2021
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  2. Split files to reduce build time

    @eschnett
    eschnett committed Jul 7, 2021
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  3. Merge branch 'dev' into eschnett/julia-bindings

    @eschnett
    eschnett committed Jul 7, 2021
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  4. Disable ReadIterations

    @eschnett
    eschnett committed Jul 7, 2021
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  5. Define chunk function wrappers

    @eschnett
    eschnett committed Jul 7, 2021
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  6. Add functions to create shared_ptrs

    @eschnett
    eschnett committed Jul 7, 2021
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  7. Use cxx_ prefix instead of 1 suffix

    @eschnett
    eschnett committed Jul 7, 2021
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Commits on Jul 8, 2021

  1. Rename Container to CXX_Container; remove unused code

    @eschnett
    eschnett committed Jul 8, 2021
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  2. Correct wrapping names

    @eschnett
    eschnett committed Jul 8, 2021
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  3. Wrap availableChunks

    @eschnett
    eschnett committed Jul 8, 2021
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  4. Merge branch 'dev' into eschnett/julia-bindings 

    # Conflicts:
#	CMakeLists.txt
    @eschnett
    eschnett committed Jul 8, 2021
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  5. Correct error in wrapping WrittenChunkInfo

    @eschnett
    eschnett committed Jul 8, 2021
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  6. Correct template parameter type

    @eschnett
    eschnett committed Jul 8, 2021
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Commits on Jul 30, 2021

  1. Merge branch 'dev' into eschnett/julia-bindings

    @eschnett
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  2. Julia: Rename SeriesImpl -> SeriesInterface

    @eschnett
    eschnett committed Jul 30, 2021
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Commits on Aug 7, 2021

  1. Merge branch 'dev' into eschnett/julia-bindings

    @eschnett
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Commits on Aug 20, 2021

  1. Merge branch 'dev' into eschnett/julia-bindings

    @eschnett
    eschnett committed Aug 20, 2021
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  2. Disable Julia bindings by default

    @eschnett
    eschnett committed Aug 20, 2021
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  3. Clean up macro FORALL_OPENPMD_TYPES

    @eschnett
    eschnett committed Aug 20, 2021
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  4. Avoid compiler warnings

    @eschnett
    eschnett committed Aug 20, 2021
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  5. Experiment with templates for iterating over types

    @eschnett
    eschnett committed Aug 20, 2021
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Commits on Sep 17, 2021

  1. Simplify cmake statements for Julia

    @eschnett
    eschnett committed Sep 17, 2021
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  2. Correct Julia bindings for MPI_Comm

    @eschnett
    eschnett committed Sep 17, 2021
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  3. Rename Julia library to openPMD.jl

    @eschnett
    eschnett committed Sep 17, 2021
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  4. Merge branch 'dev' of https://github.com/openPMD/openPMD-api into esc… 

    …hnett/julia-bindings

# Conflicts:
#	CMakeLists.txt
    @eschnett
    eschnett committed Sep 17, 2021
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  5. Remove Julia wrapper for "DATATYPE"

    @eschnett
    eschnett committed Sep 17, 2021
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  6. Remove "AUTO" logic for Julia

    @eschnett
    eschnett committed Sep 17, 2021
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  7. CI: Build Julia bindings on macOS

    @eschnett
    eschnett committed Sep 17, 2021
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  8. CI: Install Julia via homebrew

    @eschnett
    eschnett committed Sep 17, 2021
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Commits on Sep 18, 2021

  1. CI: Correct cmake options for installing libcxxwrap-julia

    @eschnett
    eschnett committed Sep 18, 2021
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  2. CI: Require macOS 10.12+ for Julia bindings

    @eschnett
    eschnett committed Sep 18, 2021
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  3. CI: Build Julia bindings on gcc9_py38_pd_nompi_h5_ad1_ad2_libcpp

    @eschnett
    eschnett committed Sep 18, 2021
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Commits on Oct 13, 2021

  1. Add close function to Series object

    @eschnett
    eschnett committed Oct 13, 2021
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  2. Merge branch 'dev' of https://github.com/openPMD/openPMD-api into esc… 

    …hnett/julia-bindings
    @eschnett
    eschnett committed Oct 13, 2021
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  3. [julia] Wrap Series::closeee

    @eschnett
    eschnett committed Oct 13, 2021
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Commits on Dec 17, 2021

  1. Julia interface: Clean up handling std::array<double, 7>

    @eschnett
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Commits on Dec 30, 2021

  1. Merge branch 'dev' of https://github.com/openPMD/openPMD-api into esc… 

    …hnett/julia-bindings

# Conflicts:
#	include/openPMD/Series.hpp
#	include/openPMD/auxiliary/VariantSrc.hpp
    @eschnett
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Commits on Dec 31, 2021

  1. Resolve merge errors

    @eschnett
    eschnett committed Dec 31, 2021
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  2. Update Julia interface

    @eschnett
    eschnett committed Dec 31, 2021
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  3. CI: Update to Julia 1.6.5; correct yaml syntax

    @eschnett
    eschnett committed Dec 31, 2021
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  4. CI: Use newer version of libcxxwrap-julia

    @eschnett
    eschnett committed Dec 31, 2021
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  5. CI: Correct Julia/libcxxwrap download commands

    @eschnett
    eschnett committed Dec 31, 2021
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  6. Avoid unused-parameter warning

    @eschnett
    eschnett committed Dec 31, 2021
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  7. Avoid compiler warnings

    @eschnett
    eschnett committed Dec 31, 2021
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  8. Add missing include header

    @eschnett
    eschnett committed Dec 31, 2021
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Commits on Jan 1, 2022

  1. Correct pointer casts

    @eschnett
    eschnett committed Jan 1, 2022
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Commits on Jan 2, 2022

  1. Remove outdated function from Julia bindings

    @eschnett
    eschnett committed Jan 2, 2022
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  2. [Julia] Use memcpy to handle MPI_Comm

    @eschnett
    eschnett committed Jan 2, 2022
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Commits on Jan 25, 2022

  1. Merge remote-tracking branch 'mainline/dev' into eschnett/julia-bindings

    @ax3l
    ax3l committed Jan 25, 2022
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  2. CI: Simply with cmake-easyinstall

    @ax3l
    ax3l committed Jan 25, 2022
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Commits on Mar 8, 2022

  1. Merge branch 'dev' into eschnett/julia-bindings

    @eschnett
    eschnett committed Mar 8, 2022
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  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  3. Set CMAKE_OSX_DEPLOYMENT_TARGET to 10.14

    @eschnett
    eschnett committed Mar 8, 2022
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Commits on Nov 11, 2022

  1. Merge branch 'dev' into eschnett/julia-bindings 

    * dev: (70 commits)
  Docs: Recommend Static Build for Superbuilds (openPMD#1325)
  Python 3.11 (openPMD#1323)
  pybind11: v2.10.1+ (openPMD#1322)
  Add Attribute::getOptional<T>() and use to add some more dynamic datatype conversions at read time (openPMD#1278)
  Mapping between ADIOS steps and openPMD iterations (openPMD#949)
  Deprecate shareRaw (openPMD#1229)
  Fix append mode double attributes (openPMD#1302)
  Constant scalars: Don't flush double (openPMD#1315)
  Remove caching cmake vars (openPMD#1313)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1311)
  storeChunk: Add an overload for shared_ptr<T[]> (openPMD#1296)
  Fix `operationAsString` Export (openPMD#1309)
  ADIOS2: more fine-grained control for file endings (openPMD#1218)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1307)
  Fix file existence check in parallel tests (openPMD#1303)
  ADIOS2: Flush to disk within a step (openPMD#1207)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1304)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1295)
  Update catch2 to v2.13.9 (openPMD#1299)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1292)
  ...

# Conflicts:
#	.github/workflows/linux.yml
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  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  3. Julia: Update ADIOS2 format enum constants

    @eschnett
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  4. Julia: Wrap call to seriesFlush in lambda to resolve overload

    @eschnett
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Commits on May 19, 2023

  1. Simplify CMakeLists.txt

    @eschnett
    eschnett committed May 19, 2023
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  2. Merge branch 'dev' into eschnett/julia-bindings 

    * dev: (82 commits)
  Docs: Linking to C++ Projects (openPMD#1445)
  CI: macOS-11 Update (openPMD#1446)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1437)
  Fix deprecated storeChunk APIs in first read/write examples (openPMD#1435)
  Update .readthedocs.yml (openPMD#1438)
  Doc: Fix Bib Authors (openPMD#1434)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1425)
  More careful documentation of streaming API (openPMD#1430)
  Fix gcc9 warning (openPMD#1429)
  Python bindings: Release GIL during IO wait operations (openPMD#1381)
  RecordComponent: Properly handle uninitialized datasets (openPMD#1316)
  Remove ADIOS1 - Long Live ADIOS2 (openPMD#1419)
  Post 0.15.0 Changelog Template (openPMD#1420)
  GitHub Actions: macOS has 3 Cores (openPMD#1421)
  `version.hpp`: 0.15.1 (openPMD#1417)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1416)
  Release 0.15.1 (openPMD#1414)
  Doc: More HTML Updates (CSS) (openPMD#1413)
  Enable clang-format also for .tpp files by using a regex instead of a predefined filter (openPMD#1403)
  Docs: Update Funding (openPMD#1412)
  ...

# Conflicts:
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#	CMakeLists.txt
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  4. CI: Correct yaml syntax

    @eschnett
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  5. CI: Require newer macOS when installing dependencies

    @eschnett
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  6. CI: Require newer libcxxwrap on macOS

    @eschnett
    eschnett committed May 19, 2023
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  7. CI: Require macOS 10.15 for Julia bindings

    @eschnett
    eschnett committed May 19, 2023
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  8. CI: Install dot executable when building documentation

    @eschnett
    eschnett committed May 19, 2023
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  9. Document install with Julia

    @eschnett
    eschnett committed May 19, 2023
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  10. CI: Rename workflow

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Commits on Jun 15, 2023

  1. Replace FORALL_OPENPMD_TYPES -> forallJuliaTypes 

    Same for forallScalarJuliaTypes
    @franzpoeschel
    franzpoeschel committed Jun 15, 2023
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  2. Replace typedef -> using

    @franzpoeschel
    franzpoeschel committed Jun 15, 2023
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  3. Use overload_cast

    @franzpoeschel
    franzpoeschel committed Jun 15, 2023
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Commits on Aug 1, 2023

  1. Rename USE_Julia to USE_JULIA

    @eschnett
    eschnett committed Aug 1, 2023
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  2. Add copyright comments to Julia bindings

    @eschnett
    eschnett committed Aug 1, 2023
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  3. CI: Update USE_JULIA config option

    @eschnett
    eschnett committed Aug 1, 2023
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  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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Commits on Aug 2, 2023

  1. Merge pull request #2 from franzpoeschel/julia-bindings-review 

    Review for Julia bindings PR
    @eschnett
    eschnett authored Aug 2, 2023
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  2. Add minimal Julia example

    @eschnett
    eschnett committed Aug 2, 2023
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  3. CI: Run Julia self-tests

    @eschnett
    eschnett committed Aug 2, 2023
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  4. CI: Install CxxWrap for Julia tests

    @eschnett
    eschnett committed Aug 2, 2023
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  5. CI: Install CxxWrap for Julia tests

    @eschnett
    eschnett committed Aug 2, 2023
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Commits on Aug 3, 2023

  1. CI: Switch to Julia 1.7

    @eschnett
    eschnett committed Aug 3, 2023
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Commits on Aug 10, 2023

  1. Merge branch 'dev' into julia-bindings-current-dev

    @franzpoeschel
    franzpoeschel committed Aug 10, 2023
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  2. Set openPMD.jl library target properties

    @franzpoeschel
    franzpoeschel committed Aug 10, 2023
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  3. Add low-level Julia test

    @franzpoeschel
    franzpoeschel committed Aug 10, 2023
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Commits on Aug 11, 2023

  1. Install CxxWrap Julia package and fix CI run

    @franzpoeschel
    franzpoeschel committed Aug 11, 2023
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Commits on Aug 18, 2023

  1. Install CxxWrap Julia package and fix CI run

    @franzpoeschel
    franzpoeschel committed Aug 18, 2023
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  2. Update RPATH setting to generalized method

    @franzpoeschel
    franzpoeschel committed Aug 18, 2023
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  3. Merge branch 'eschnett/julia-bindings' of ssh://github.com/eschnett/o… 

    …penPMD-api into eschnett/julia-bindings
    @eschnett
    eschnett committed Aug 18, 2023
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Commits on Sep 5, 2023

  1. Don't export openPMD_datatypes to Julia

    @eschnett
    eschnett committed Sep 5, 2023
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  2. Merge branch 'dev' into eschnett/julia-bindings 

    * dev:
  Fix CMake: HDF5 Libs are PUBLIC (openPMD#1520)
  Fix `chmod` in `download_samples.sh` (openPMD#1518)
  CI: Old CTest (openPMD#1519)
  Python: Fix ODR Violation (openPMD#1521)
  replace extent in weighting and displacement (openPMD#1510)
  CMake: Warn and Continue on Empty HDF5_VERSION (openPMD#1512)
  Replace openPMD_Datatypes global with function (openPMD#1509)
  Streaming examples: Set WAN as default transport (openPMD#1511)
  TOML Backend (openPMD#1436)
  make it possible to manually set chunks when loading dask arrays (openPMD#1477)
  [pre-commit.ci] pre-commit autoupdate (openPMD#1504)
  Optional debugging output for AbstractIOHandlerImpl::flush() (openPMD#1495)
  Python: 3.8+ (openPMD#1502)

# Conflicts:
#	.github/workflows/linux.yml
#	src/binding/python/Series.cpp
    @eschnett
    eschnett committed Sep 5, 2023
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  3. Don't export openPMD_datatypes to Julia

    @eschnett
    eschnett committed Sep 5, 2023
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  4. Configure Julia include and library directories

    @eschnett
    eschnett committed Sep 5, 2023
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  5. Configure Julia include and library directories

    @eschnett
    eschnett committed Sep 5, 2023
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Commits on Sep 6, 2023

  1. Don't configure Julia include and library directories

    @eschnett
    eschnett committed Sep 6, 2023
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Commits on Sep 7, 2023

  1. Julia: Correct set_const definitions for Datatype enum

    @eschnett
    eschnett committed Sep 7, 2023
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Commits on Sep 8, 2023

  1. CI: Correct shared library suffix for Apple

    @eschnett
    eschnett committed Sep 8, 2023
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Commits on Sep 9, 2023

  1. Julia: Correct low-level test

    @eschnett
    eschnett committed Sep 9, 2023
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  2. CI: Install libcxxwrap-julia @v0.11.0

    @eschnett
    eschnett committed Sep 9, 2023
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Commits on Oct 13, 2023

  1. Merge branch 'dev' into eschnett/julia-bindings 

    * dev:
  [pre-commit.ci] pre-commit autoupdate (openPMD#1536)
  Fix double mesh.read() call (openPMD#1535)
  Python 3.12: Remove Distutils (openPMD#1508)
  openpmd-pipe: fix handling of constant components (openPMD#1530)
  Bug fix: Linear read mode cannot directly access specific file of file-based Series (openPMD#1533)
  Unknown openPMD version in data: Add upgrade hint (openPMD#1528)
    @eschnett
    eschnett committed Oct 13, 2023
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