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[WIP] Use JSON/TOML template for defining openPMD metadata in a config file #1277

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[WIP] Use JSON/TOML template for defining openPMD metadata in a config file #1277

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Commits on Aug 5, 2024

  1. Add openPMD 2.0 standard setting

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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  2. Fix clang-tidy warning

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    franzpoeschel committed Aug 5, 2024
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  3. Introduce getStandardMaximum(), deprecate getStandard()

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    franzpoeschel committed Aug 5, 2024
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  4. Add warning: openPMD 2.0 still under development

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    franzpoeschel committed Aug 5, 2024
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  5. Introduce dataset template mode to JSON backend

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  6. Write used mode to JSON file

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  7. Use Attribute::getOptional for snapshot attribute

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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  8. Introduce attribute mode

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    franzpoeschel committed Aug 5, 2024
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  9. Add example 14_toml_template.cpp

    @franzpoeschel
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  10. Use Datatype::UNDEFINED to indicate no dataset definition in template

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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  11. Extend example

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    franzpoeschel committed Aug 5, 2024
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  12. Test short attribute mode

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    franzpoeschel committed Aug 5, 2024
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  13. Copy datatypeToString to JSON implementation

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  14. Fix after rebase: Init JSON config in parallel mode

    @franzpoeschel
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  15. Fix after rebase: Don't erase JSON datasets when writing

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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  16. openpmd-pipe: use short modes for test

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    franzpoeschel committed Aug 5, 2024
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  17. Less intrusive warnings, allow disabling them

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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  18. TOML: Use short modes by default

    @franzpoeschel
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  19. Python formatting

    @franzpoeschel
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  20. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci @franzpoeschel
    pre-commit-ci[bot] authored and franzpoeschel committed Aug 5, 2024
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  21. Documentation

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  22. Short mode in default in openPMD >= 2.

    @franzpoeschel
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  23. Short value by default in TOML

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  24. Store the openPMD version information in the IOHandler

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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  25. Fixes

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  26. Adapt test to recent rebase 

    Reading the chunk table requires NOT using template mode, otherwise the
string just consists of '\0' bytes.
    @franzpoeschel
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  27. toml11 4.0 compatibility

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  28. Initialize Series attributes and datasets from template

    @franzpoeschel
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  29. Further testing (@todo: cleanup)

    @franzpoeschel
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  30. Extend example

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  31. Only opt-into tests for TOML 

    Has the same implementation as JSON anyway, and it makes tests run into
timeouts otherwise.
    @franzpoeschel
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  32. Adapt this to changed SCALAR API

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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  33. Avoid CI warnings

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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  34. Fix after rebasing

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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  35. Ensure that E.z is there

    @franzpoeschel
    franzpoeschel committed Aug 5, 2024
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