Added fast gapfilling flag. All tests pass with fast_gapfill=True #1450
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…ck needs to happen instead of nrxns checks
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Hey folks, apologies for the slow turnaround. I finally got around to fixing the linting errors. Please rerun the workflow and it should hopefully pass all the tests, now. |
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Hmm... the unit tests failed because the Biomodels.net website was down. Reported this issue #1455 and suggested a fix. |
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fast_gapfilltocobra.flux_analysis.gapfilling.gapfill()that, whenTrue, changes the indicator variable types to becontinuousinstead ofbinary, enabling fast gapfillingtest_fast_gapfillingtest intests/test_flux_analysis/test_gapfilling.pyand it passes