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Fixed request for missing sample IDs for StreetCheck because program had switched to confirmatory.
opioiddatalab · Feb 26, 2025 · 9247d1a · 9247d1a
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commit 9247d1a
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diff --git a/chemdictionary/substances_detected.csv b/chemdictionary/substances_detected.csv
diff --git a/datasets/analysis_dataset.csv b/datasets/analysis_dataset.csv
@@ -4,8 +4,8 @@ sampleid,program,location,county,state,full_state,date_collect,sampletype,collec
 "196","redacted","Asheville","Buncombe County","NC","North Carolina",23Nov2022,"cotton","cotton",1,"methamphetamine",0,0,0,1,0,1,0,0,0,"",0,"",,,,,,,"normal","normal",,,,,,,,,,"","","not overdose related","not involved","",,0,01Dec2022,1,0,,1,1,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"Buncombe County",35.6009498,-82.5540161,"35.6009498","-82.5540161","NC | BUNCOMBE","37","021","37021"
 "473","redacted","Hickory","Catawba County","NC","North Carolina",01May2022,"syringe","syringe",1,"heroin; fentanyl",1,1,0,0,0,0,0,0,0,"clear",0,"powder",,,1,,,,"weird",,1,,,,,,,,,"heroin from powder","Ostensibly fentanyl. Thinks not but very weird","unknown",,"",,0,02Jun2022,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"Catawba County",35.7333312,-81.3442915,"35.7333312","-81.3442915","NC | CATAWBA","37","035","37035"
 "368","redacted","Gastonia","Gaston County","NC","North Carolina",01Aug2022,"unknown","unknown",1,"fentanyl",1,1,0,0,0,0,0,0,0,"tan",0,"powder; chunky",,,1,,,,"normal","normal",,,,,,,,,,"","different color than usual","not overdose related","not involved","",,0,14Sep2022,1,1,,15,3,1,1,1,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,1,1,0,1,0,0,"Catawba County",35.7333312,-81.3442915,"35.2622654","-81.1838186","NC | GASTON","37","071","37071"
-"280","redacted","Greensboro","Guilford County","NC","North Carolina",20May2022,"pill","pill",0,"MDMA",0,0,0,0,0,0,0,0,1,"blue",1,"pill",,1,,,,,"",,,,,,,,,,,"","?","not overdose related","not involved","",,0,09Jun2022,1,1,,3,1,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,1,"Guilford County",36.0726355,-79.7919754,"36.0726355","-79.7919754","NC | GUILFORD","37","081","37081"
 "424","redacted","Greensboro","Guilford County","NC","North Carolina",15Oct2021,"spatula","spatula",0,"heroin; fentanyl",1,1,0,0,0,0,0,0,0,"white",0,"powder",,,1,,,,"",,,,,,,,,,,"","","unknown",,"",,0,11Feb2022,1,0,,7,7,1,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,"Guilford County",36.0726355,-79.7919754,"36.0726355","-79.7919754","NC | GUILFORD","37","081","37081"
+"280","redacted","Greensboro","Guilford County","NC","North Carolina",20May2022,"pill","pill",0,"MDMA",0,0,0,0,0,0,0,0,1,"blue",1,"pill",,1,,,,,"",,,,,,,,,,,"","?","not overdose related","not involved","",,0,09Jun2022,1,1,,3,1,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,1,"Guilford County",36.0726355,-79.7919754,"36.0726355","-79.7919754","NC | GUILFORD","37","081","37081"
 "437","redacted","Pitt County","Pitt County","NC","North Carolina",01Oct2022,"swab","swab",0,"unknown",0,0,0,0,0,0,0,0,0,"unknown",1,"powder",,,1,,,,"",,,,,,,,,,,"","","not overdose related","not involved","",,0,11Oct2022,1,1,,3,2,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"Pitt County",35.613224,-77.3724593,"35.611481","-77.3707461","NC | PITT","37","147","37147"
 "701","redacted","Asheboro","Randolph County","NC","North Carolina",02Nov2022,"swab","swab",1,"heroin; fentanyl",1,1,0,0,0,0,0,0,0,"white",0,"powder",,,1,,,,"normal; stronger","stronger",,,,,,,,,,"","","not overdose related","not involved","",,0,29Nov2022,1,1,,9,4,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,"Randolph County",35.7079146,-79.8136446,"35.7079146","-79.8136446","NC | RANDOLPH","37","151","37151"
 "101","redacted","Raleigh","Wake County","NC","North Carolina",15Apr2022,"unknown","unknown",1,"MDMA",0,0,0,0,0,0,0,0,1,"brown",0,"powder; chunky",,,1,,,,"weird",,1,,,,,,,,,"","","not overdose related","not involved","",,0,04Aug2022,1,1,,2,1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,"Guilford County",36.0726355,-79.7919754,"35.7803977","-78.6390989","NC | WAKE","37","183","37183"

diff --git a/datasets/analysis_dataset.dta b/datasets/analysis_dataset.dta
diff --git a/datasets/analysis_dataset.v8xpt b/datasets/analysis_dataset.v8xpt
diff --git a/datasets/analysis_dataset.xlsx b/datasets/analysis_dataset.xlsx
diff --git a/datasets/code/Streamlit/x_subs.csv b/datasets/code/Streamlit/x_subs.csv
@@ -26,65 +26,65 @@ substance,samples,rank
 "non-specific sugars",17,25
 "medetomidine",17,26
 "phenethyl bromide",14,27
-"despropionyl ortho-methylfentanyl",12,28
-"bromazolam",12,29
+"bromazolam",12,28
+"despropionyl ortho-methylfentanyl",12,29
 "1-phenethyl-4-propionyloxypiperidine",11,30
 "N-butyl-aniline",11,31
 "mannitol",10,32
 "gabapentin",9,33
 "menthol",9,34
-"papaverine",7,35
-"ortho-methylfentanyl",7,36
-"erythritol",7,37
+"erythritol",7,35
+"papaverine",7,36
+"ortho-methylfentanyl",7,37
 "methyl ecgonidine (MED)",6,38
-"N-propionyl norfentanyl",5,39
-"ketamine",5,40
-"1-phenyl-1-propanamine",5,41
-"4-anilinopiperidine",5,42
+"4-anilinopiperidine",5,39
+"N-propionyl norfentanyl",5,40
+"ketamine",5,41
+"1-phenyl-1-propanamine",5,42
 "N-phenethyl-N-phenylpropionamide",5,43
-"non-specific sugar",4,44
+"2-Fluoro-2-oxo PCE",4,44
 "tiletamine",4,45
-"phenacetin",4,46
-"2-Fluoro-2-oxo PCE",4,47
+"non-specific sugar",4,46
+"benzocaine",4,47
 "metonitazene",4,48
-"benzocaine",4,49
-"tropacocaine",3,50
-"meconin",3,51
-"xylitol",3,52
-"hydrocotarnine",3,53
-"acetyl fentanyl",3,54
-"melatonin",3,55
-"4-Anilino-1-Boc-piperidine",2,56
-"urea",2,57
-"inositol",2,58
-"1-propionyl-4-anilinopiperidine",2,59
+"phenacetin",4,49
+"acetyl fentanyl",3,50
+"tropacocaine",3,51
+"meconin",3,52
+"melatonin",3,53
+"hydrocotarnine",3,54
+"xylitol",3,55
+"valeryl fentanyl",2,56
+"4-Anilino-1-Boc-piperidine",2,57
+"benzoylecgonine (BZ)",2,58
+"non-specific phthalate",2,59
 "benzyl benzoate",2,60
-"delta-9-THC",2,61
+"tetracaine",2,61
 "levamisole",2,62
-"N,N-dimethylpentylone",2,63
-"tetracaine",2,64
-"phenethyl chloride",2,65
-"non-specific phthalate",2,66
+"urea",2,63
+"1-propionyl-4-anilinopiperidine",2,64
+"inositol",2,65
+"sucrose",2,66
 "noscapine",2,67
-"sucrose",2,68
-"benzoylecgonine (BZ)",2,69
-"ortho-chlorofentanyl",2,70
-"valeryl fentanyl",2,71
+"phenethyl chloride",2,68
+"ortho-chlorofentanyl",2,69
+"delta-9-THC",2,70
+"N,N-dimethylpentylone",2,71
 "eutylone",1,72
-"N-cyclohexyl butylone",1,73
-"nicotine",1,74
-"protonitazene",1,75
-"lactose",1,76
-"naproxen",1,77
-"1,4-Butanediol",1,78
-"methylparaben",1,79
-"ecgonine methylester (EME)",1,80
-"p-fluoroacetyl fentanyl",1,81
-"niacinamide",1,82
-"non-specific organic acids",1,83
-"norcocaine",1,84
-"PMK ethyl glycidate",1,85
-"ibuprofen",1,86
-"benzoic acid",1,87
-"1-phenethyl-4-hydroxypiperidine",1,88
-"flualprazolam",1,89
+"PMK ethyl glycidate",1,73
+"p-fluoroacetyl fentanyl",1,74
+"norcocaine",1,75
+"ibuprofen",1,76
+"non-specific organic acids",1,77
+"N-cyclohexyl butylone",1,78
+"niacinamide",1,79
+"methylparaben",1,80
+"ecgonine methylester (EME)",1,81
+"protonitazene",1,82
+"flualprazolam",1,83
+"1-phenethyl-4-hydroxypiperidine",1,84
+"benzoic acid",1,85
+"naproxen",1,86
+"1,4-Butanediol",1,87
+"nicotine",1,88
+"lactose",1,89
diff --git a/datasets/code/result_processing.do b/datasets/code/result_processing.do
@@ -369,6 +369,9 @@ replace confirmatory=1 if regexm(sampleid, "600539|600541|600555|600557|600559|6
 *replace confirmatory=1 if program="CASJ" & regexm(sampleid, "600")
 
 
+******* Requested by Cole Jarczyk on Feb 25, 2025
+replace confirmatory=1 if regexm(sampleid, "400977|400877|400887|400831|400748|602969|400820|400955|602968|603063|900061|900046|900072|601782|601766")
+
 ******* Add NC Survivors Union to confirmatory going forward
 do "/Users/nabarun/Documents/dc_internal/confirmatory_program_switch.do"